Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 0.0e+00 1201.4 606 100.0
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 0.0e+00 1097.0 593 93.3
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 2.3e-305 1051.6 605 86.9
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.0e-304 1048.5 609 86.5
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 7.5e-304 1046.6 607 86.8
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.8e-265 919.1 595 78.8
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.4e-238 829.7 604 70.4
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.3e-234 816.6 598 69.7
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.2e-230 802.0 608 67.6
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.2e-229 800.0 601 67.4
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 5.1e-228 794.7 593 68.1
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 7.4e-227 790.8 613 66.9
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 3.8e-223 778.5 605 66.9
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 8.5e-223 777.3 608 65.6
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 8.5e-223 777.3 608 65.6
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 5.5e-222 774.6 601 65.6
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.2e-221 773.5 606 65.8
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 6.1e-221 771.2 591 66.2
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 5.7e-219 764.6 613 65.1
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 6.9e-217 757.7 609 64.4
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.5e-216 756.5 608 64.3
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.1e-214 750.4 608 64.0
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.7e-213 745.7 625 62.4
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 4.7e-213 745.0 609 64.5
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.8e-210 735.7 631 61.8
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.2e-207 726.1 595 62.2
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 3.8e-207 725.3 604 60.9
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.2e-206 721.8 608 62.0
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 9.4e-206 720.7 608 62.0
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.6e-205 719.9 608 61.7
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 3.6e-205 718.8 595 62.0
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 6.1e-205 718.0 593 62.7
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 6.1e-205 718.0 593 61.6
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 3.0e-204 715.7 588 62.4
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 8.8e-204 714.1 608 61.3
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.5e-203 713.4 594 61.4
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.4e-203 711.8 610 62.0
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 9.7e-203 710.7 598 61.0
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 4.8e-202 708.4 582 61.2
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 4.8e-202 708.4 597 60.1
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.4e-201 706.8 609 61.4
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.6e-200 703.4 591 58.9
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.6e-200 703.4 597 59.6
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 2.6e-200 702.6 526 67.3
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.5e-200 702.2 544 65.1
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.5e-200 701.8 606 61.2
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 2.9e-199 699.1 609 59.4
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 6.5e-199 698.0 588 60.0
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.1e-198 697.2 606 60.9
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.5e-198 696.0 588 60.2
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 2.5e-198 696.0 528 66.3
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 7.2e-198 694.5 606 58.9
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 9.4e-198 694.1 606 60.7
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 2.7e-197 692.6 613 57.6
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 2.7e-197 692.6 614 59.6
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 2.7e-197 692.6 608 60.4
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 8.0e-197 691.0 523 65.4
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 6.8e-196 688.0 557 63.2
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 1.2e-195 687.2 613 58.4
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.5e-195 686.8 603 60.7
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 2.0e-195 686.4 604 60.4
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 4.4e-195 685.3 623 55.7
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 7.5e-195 684.5 798 48.6
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 9.8e-195 684.1 613 58.1
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 8.3e-194 681.0 606 57.8
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 7.0e-193 677.9 618 56.3
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.2e-192 677.2 588 58.7
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 2.7e-192 676.0 618 56.3
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 2.7e-192 676.0 662 56.0
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 5.9e-192 674.9 613 56.3
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 7.7e-192 674.5 613 56.4
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.7e-191 673.3 618 55.8
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.7e-191 673.3 606 56.4
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 2.9e-191 672.5 632 59.3
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.5e-190 670.2 613 55.1
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 3.2e-190 669.1 618 55.8
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 7.2e-190 667.9 587 60.5
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 7.2e-190 667.9 597 59.3
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.0e-188 664.1 624 55.4
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 3.0e-188 662.5 608 58.1
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 8.8e-188 661.0 610 55.9
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.2e-187 660.6 587 58.9
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 8.3e-186 654.4 608 55.3
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 2.0e-184 649.8 609 54.8
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 4.4e-179 632.1 531 58.9
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 1.5e-174 617.1 581 56.5
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.2e-173 614.0 558 58.6
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.8e-173 612.8 491 63.3
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 6.4e-170 601.7 572 55.2
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 7.8e-168 594.7 544 56.2
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.5e-163 580.5 599 52.8
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.6e-163 579.7 624 52.4
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 3.7e-162 575.9 612 50.5
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 2.0e-155 553.5 620 51.3
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.1e-153 545.8 363 74.4
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 9.2e-153 544.7 610 46.7
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.0e-151 541.2 477 61.2
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 9.0e-124 448.4 454 51.5
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 3.9e-119 433.0 546 45.6
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 9.6e-118 428.3 512 45.5
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 5.9e-115 419.1 393 54.7
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 3.2e-113 413.3 304 67.4
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 9.3e-113 411.8 528 43.6
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.4e-108 397.9 579 39.6
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 6.7e-103 379.0 357 55.2
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 8.5e-90 335.5 181 95.0
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 3.5e-83 313.5 278 57.9
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 4.0e-79 300.1 216 69.9
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.1e-76 292.0 216 69.9
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.6e-72 278.1 601 32.3
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.1e-72 277.7 423 40.0
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 5.2e-71 273.1 273 52.4
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 3.5e-67 260.4 369 37.4
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.0e-66 256.5 302 44.0
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.1e-52 210.3 174 60.9
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 2.0e-38 164.9 112 71.4
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.7e-37 161.8 123 60.2
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 8.4e-37 159.5 122 66.4
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 7.6e-30 136.3 108 61.1
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.7e-29 135.2 103 64.1
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 5.1e-26 123.6 258 35.3
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 1.1e-25 122.5 97 59.8
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.9e-25 121.7 75 77.3
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.1e-23 115.9 377 27.6
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 2.6e-22 111.3 346 25.4
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.2e-21 108.2 98 51.0
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 3.8e-21 107.5 87 60.9
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 2.4e-20 104.8 183 38.8
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 2.4e-20 104.8 74 60.8
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 7.1e-20 103.2 196 34.2
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 7.1e-20 103.2 111 45.9
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 3.5e-19 100.9 74 59.5
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.0e-18 97.8 127 44.9
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.9e-12 78.6 152 34.9
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 4.2e-12 77.4 64 51.6
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 1.6e-11 75.5 138 37.7
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 2.7e-11 74.7 220 27.7
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 2.7e-11 74.7 60 58.3
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 3.9e-10 70.9 115 35.7
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 4.3e-09 67.4 58 60.3
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 8.2e-08 63.2 82 45.1


User provided reference genes

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