Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002293g0040 Nicotiana tabacum HOM05D004991 ORTHO05D006690 1.7e-230 802.4 413 100.0
CAN.G1016.3 Capsicum annuum HOM05D004991 ORTHO05D006690 8.5e-142 507.7 526 58.4
PGSC0003DMG400008342 Solanum tuberosum HOM05D004991 ORTHO05D006690 4.2e-141 505.4 562 56.0
Sopen03g024840 Solanum pennellii HOM05D004991 ORTHO05D006690 2.1e-140 503.1 562 55.7
Sopen06g002160 Solanum pennellii HOM05D004991 ORTHO05D006690 2.1e-140 503.1 562 55.7
Peaxi162Scf00073g01724 Petunia axillaris HOM05D004991 ORTHO05D006690 4.4e-138 495.4 557 54.6
vmacro09929 Vaccinium macrocarpon HOM05D004991 ORTHO05D006690 1.3e-134 483.8 575 51.3
SGA_v2.0_scaffold60G20847 Striga asiatica HOM05D004991 ORTHO05D006690 1.8e-131 473.4 588 48.6
Dinv34534 Davidia involucrata HOM05D004991 ORTHO05D006690 1.0e-126 457.6 508 54.5
Actinidia01035 Actinidia chinensis HOM05D004991 ORTHO05D006690 8.0e-124 448.0 562 50.9
Rhsim09G0188500 Rhododendron simsii HOM05D004991 ORTHO05D006690 1.5e-122 443.7 561 50.8
Nn1g00766 Nelumbo nucifera HOM05D004991 ORTHO05D006690 2.9e-121 439.5 560 49.6
Cc00_g13040 Coffea canephora HOM05D004991 ORTHO05D006690 6.4e-121 438.3 572 49.7
Dinv16894 Davidia involucrata HOM05D004991 ORTHO05D006690 7.8e-119 431.4 566 49.1
Lj8A49G38 Lonicera japonica HOM05D004991 ORTHO05D006690 1.0e-118 431.0 562 49.1
MSTRG.27231 Avicennia marina HOM05D004991 ORTHO05D006690 2.5e-117 426.4 523 50.5
Migut.F00542 Erythranthe guttata HOM05D004991 ORTHO05D006690 4.3e-117 425.6 511 51.5
TAR375G0717 Trochodendron aralioides HOM05D004991 ORTHO05D006690 2.1e-116 423.3 556 48.0
GSVIVG01024473001 Vitis vinifera HOM05D004991 ORTHO05D006690 1.4e-115 420.6 556 50.2
Oeu030873.1 Olea europaea HOM05D004991 ORTHO05D006690 3.1e-115 419.5 560 48.6
Manes.14G041100 Manihot esculenta HOM05D004991 ORTHO05D006690 2.6e-114 416.4 563 48.8
Thecc.03G145300 Theobroma cacao HOM05D004991 ORTHO05D006690 2.6e-114 416.4 557 49.6
MBI04_g13852_MAGBIO Magnolia biondii HOM05D004991 ORTHO05D006690 5.8e-114 415.2 573 46.9
COL.COLO4_37308 Corchorus olitorius HOM05D004991 ORTHO05D006690 9.8e-114 414.5 564 49.3
ECA232G0310 Erigeron canadensis HOM05D004991 ORTHO05D006690 1.7e-113 413.7 569 48.2
HanXRQChr09g0252201 Helianthus annuus HOM05D004991 ORTHO05D006690 2.9e-113 412.9 563 48.8
TWI14G0627 Tripterygium wilfordii HOM05D004991 ORTHO05D006690 3.7e-113 412.5 520 51.3
Ciclev10031244m.g Citrus clementina HOM05D004991 ORTHO05D006690 1.1e-112 411.0 546 49.6
Duzib068G0066 Durio zibethinus HOM05D004991 ORTHO05D006690 1.1e-112 411.0 558 49.3
Atru.chr6.1976 Acer truncatum HOM05D004991 ORTHO05D006690 2.4e-112 409.8 552 50.0
DCAR_014644 Daucus carota HOM05D004991 ORTHO05D006690 3.2e-112 409.5 547 47.2
Gohir.A03G061000 Gossypium hirsutum HOM05D004991 ORTHO05D006690 7.0e-112 408.3 556 47.5
Aqoxy3G02658 Aquilegia oxysepala HOM05D004991 ORTHO05D006690 2.7e-111 406.4 561 48.0
Gohir.D03G105000 Gossypium hirsutum HOM05D004991 ORTHO05D006690 4.6e-111 405.6 556 48.4
Gorai.003G111000 Gossypium raimondii HOM05D004991 ORTHO05D006690 4.6e-111 405.6 556 48.4
PGR042G3269 Punica granatum HOM05D004991 ORTHO05D006690 7.8e-111 404.8 577 46.3
Sabra15G0133000 Salix brachista HOM05D004991 ORTHO05D006690 7.8e-111 404.8 558 47.8
Cpa.g.sc13.221 Carica papaya HOM05D004991 ORTHO05D006690 3.9e-110 402.5 553 49.0
Hma1.2p1_0502F.1_g167940 Hydrangea macrophylla HOM05D004991 ORTHO05D006690 6.6e-110 401.7 552 47.6
Sabra12G0082800 Salix brachista HOM05D004991 ORTHO05D006690 8.6e-110 401.4 525 48.4
Potri.015G111200 Populus trichocarpa HOM05D004991 ORTHO05D006690 2.5e-109 399.8 560 47.1
PSO063G0983 Papaver somniferum HOM05D004991 ORTHO05D006690 5.6e-109 398.7 563 47.4
TWI39G0803 Tripterygium wilfordii HOM05D004991 ORTHO05D006690 7.3e-109 398.3 559 49.2
CANSAT56G0842 Cannabis sativa HOM05D004991 ORTHO05D006690 9.5e-109 397.9 567 46.7
PSO782G2232 Papaver somniferum HOM05D004991 ORTHO05D006690 2.1e-108 396.7 561 47.2
Eucgr.A02933 Eucalyptus grandis HOM05D004991 ORTHO05D006690 4.7e-108 395.6 512 47.7
Potri.012G113700 Populus trichocarpa HOM05D004991 ORTHO05D006690 6.2e-108 395.2 557 45.8
Lsat_1_v5_gn_9_58401 Lactuca sativa HOM05D004991 ORTHO05D006690 1.1e-107 394.4 561 45.5
VMungo0720G1976 Vigna mungo HOM05D004991 ORTHO05D006690 2.3e-107 393.3 568 46.0
Hund14297 Selenicereus undatus HOM05D004991 ORTHO05D006690 5.2e-107 392.1 569 45.9
Prupe.2G270300 Prunus persica HOM05D004991 ORTHO05D006690 1.5e-106 390.6 555 47.7
EL10Ac5g12571 Beta vulgaris HOM05D004991 ORTHO05D006690 2.0e-106 390.2 563 46.9
BraSC35t46003Z Brassica rapa HOM05D004991 ORTHO05D006690 4.4e-106 389.0 561 46.9
Gohir.A09G248400 Gossypium hirsutum HOM05D004991 ORTHO05D006690 4.4e-106 389.0 554 46.8
Gorai.006G273700 Gossypium raimondii HOM05D004991 ORTHO05D006690 4.4e-106 389.0 559 46.5
CDE11G0390 Ceratophyllum demersum HOM05D004991 ORTHO05D006690 5.8e-106 388.7 475 52.6
A10p07970 Brassica napus HOM05D004991 ORTHO05D006690 1.7e-105 387.1 561 46.7
Carub.0008s1119 Capsella rubella HOM05D004991 ORTHO05D006690 1.7e-105 387.1 559 45.6
Cfa013604 Carpinus fangiana HOM05D004991 ORTHO05D006690 1.7e-105 387.1 534 48.7
Sp6g13360 Schrenkiella parvula HOM05D004991 ORTHO05D006690 1.7e-105 387.1 561 47.1
BcaC04g20727 Brassica carinata HOM05D004991 ORTHO05D006690 2.2e-105 386.7 561 46.5
C09p39840 Brassica napus HOM05D004991 ORTHO05D006690 2.2e-105 386.7 561 46.5
BolC9t56883H Brassica oleracea HOM05D004991 ORTHO05D006690 2.2e-105 386.7 561 46.5
RcHm_v2.0_Chr1g0373261 Rosa chinensis HOM05D004991 ORTHO05D006690 2.9e-105 386.3 561 46.5
MD07G1241200 Malus domestica HOM05D004991 ORTHO05D006690 3.7e-105 386.0 565 47.3
Phvul.L001785 Phaseolus vulgaris HOM05D004991 ORTHO05D006690 6.4e-105 385.2 565 46.9
Sed0023274 Sechium edule HOM05D004991 ORTHO05D006690 6.4e-105 385.2 575 46.3
AL8G25410 Arabidopsis lyrata HOM05D004991 ORTHO05D006690 1.1e-104 384.4 560 47.1
AT5G51150 Arabidopsis thaliana HOM05D004991 ORTHO05D006690 1.1e-104 384.4 560 47.5
Glyma.20G198600 Glycine max HOM05D004991 ORTHO05D006690 1.4e-104 384.0 565 47.3
FvH4_7g26640 Fragaria vesca HOM05D004991 ORTHO05D006690 1.9e-104 383.6 559 46.3
Aa31LG3G7660 Aethionema arabicum HOM05D004991 ORTHO05D006690 3.2e-104 382.9 563 46.7
CiPaw.07G183100 Carya illinoinensis HOM05D004991 ORTHO05D006690 4.1e-104 382.5 534 47.2
Glyma.10G191600 Glycine max HOM05D004991 ORTHO05D006690 4.1e-104 382.5 565 45.7
Manes.06G129800 Manihot esculenta HOM05D004991 ORTHO05D006690 4.1e-104 382.5 565 45.8
ClCG01G004880 Citrullus lanatus HOM05D004991 ORTHO05D006690 1.2e-103 380.9 573 46.1
Duzib084G1450 Durio zibethinus HOM05D004991 ORTHO05D006690 1.2e-103 380.9 559 46.7
Ah.12g058550 Amaranthus hybridus HOM05D004991 ORTHO05D006690 1.6e-103 380.6 567 43.7
Medtr1g072830 Medicago truncatula HOM05D004991 ORTHO05D006690 2.1e-103 380.2 535 47.5
AUR62030431 Chenopodium quinoa HOM05D004991 ORTHO05D006690 4.6e-103 379.0 568 44.2
Lalb_Chr06g0169601 Lupinus albus HOM05D004991 ORTHO05D006690 6.0e-103 378.6 558 45.0
BcaB08g35470 Brassica carinata HOM05D004991 ORTHO05D006690 1.0e-102 377.9 566 45.8
QL09p027386 Quercus lobata HOM05D004991 ORTHO05D006690 1.7e-102 377.1 606 43.2
Thhalv10013222m.g Eutrema salsugineum HOM05D004991 ORTHO05D006690 2.3e-102 376.7 560 46.1
Ca_09787_v3 Cicer arietinum L. HOM05D004991 ORTHO05D006690 6.6e-102 375.2 573 45.9
MELO3C005445.2 Cucumis melo HOM05D004991 ORTHO05D006690 3.3e-101 372.9 497 47.5
FAN03G3358 Fragaria x ananassa HOM05D004991 ORTHO05D006690 3.3e-101 372.9 559 45.6
Gohir.D07G049050 Gossypium hirsutum HOM05D004991 ORTHO05D006690 2.8e-100 369.8 500 48.2
Sed0019867 Sechium edule HOM05D004991 ORTHO05D006690 4.7e-100 369.0 570 43.5
Gorai.001G052200 Gossypium raimondii HOM05D004991 ORTHO05D006690 6.2e-100 368.6 536 46.1
Lj5g0020821 Lotus japonicus HOM05D004991 ORTHO05D006690 6.2e-100 368.6 571 44.3
CDE02G4339 Ceratophyllum demersum HOM05D004991 ORTHO05D006690 1.1e-99 367.9 502 46.6
Solyc03g093990.4 Solanum lycopersicum HOM05D004991 ORTHO05D006690 1.4e-99 367.5 408 53.9
CsaV3_5G005110 Cucumis sativus L. HOM05D004991 ORTHO05D006690 2.3e-99 366.7 535 46.5
Haze_22225 Corylus avellana HOM05D004991 ORTHO05D006690 4.0e-99 365.9 528 47.3
BcaC01g06096 Brassica carinata HOM05D004991 ORTHO05D006690 1.3e-97 360.9 564 44.7
C03p19160 Brassica napus HOM05D004991 ORTHO05D006690 1.3e-97 360.9 564 44.7
BolC3t14304H Brassica oleracea HOM05D004991 ORTHO05D006690 1.3e-97 360.9 564 44.7
FAN06G1714 Fragaria x ananassa HOM05D004991 ORTHO05D006690 1.7e-97 360.5 509 46.2
Lalb_Chr21g0312591 Lupinus albus HOM05D004991 ORTHO05D006690 1.7e-97 360.5 568 43.5
ATR0665G298 Amborella trichopoda HOM05D004991 ORTHO05D006690 2.9e-97 359.8 541 43.8
Zm00001eb322110 Zea mays HOM05D004991 ORTHO05D006690 2.9e-97 359.8 550 43.5
BcaC01g06078 Brassica carinata HOM05D004991 ORTHO05D006690 4.9e-97 359.0 567 43.4
THA.LOC104811541 Tarenaya hassleriana HOM05D004991 ORTHO05D006690 4.9e-97 359.0 525 45.1
Zm00001eb322080 Zea mays HOM05D004991 ORTHO05D006690 4.9e-97 359.0 550 43.5
BraA03t10918Z Brassica rapa HOM05D004991 ORTHO05D006690 8.4e-97 358.2 564 44.3
A03p16270 Brassica napus HOM05D004991 ORTHO05D006690 1.4e-96 357.5 564 44.3
AUR62010468 Chenopodium quinoa HOM05D004991 ORTHO05D006690 1.3e-94 350.9 543 41.8
arahy.Tifrunner.gnm1.ann1.GMTF4T Arachis hypogaea HOM05D004991 ORTHO05D006690 8.6e-94 348.2 535 44.3
Psat6g140160 Pisum sativum HOM05D004991 ORTHO05D006690 3.6e-92 342.8 553 43.2
arahy.Tifrunner.gnm1.ann1.A0K4XE Arachis hypogaea HOM05D004991 ORTHO05D006690 4.0e-91 339.3 533 43.5
CSS0004669 Camellia sinensis var. sinensis HOM05D004991 ORTHO05D006690 2.7e-87 326.6 200 80.0
SalBow3G1983 Salvia bowleyana HOM05D004991 ORTHO05D006690 1.7e-81 307.4 455 43.5
Gohir.A07G044600 Gossypium hirsutum HOM05D004991 ORTHO05D006690 9.3e-80 301.6 200 73.0
Aqoxy180s002 Aquilegia oxysepala HOM05D004991 ORTHO05D006690 3.0e-78 296.6 203 73.4
Os07g0494900 Oryza sativa ssp. japonica HOM05D004991 ORTHO05D006690 1.6e-76 290.8 188 73.4
CiPaw.08G042700 Carya illinoinensis HOM05D004991 ORTHO05D006690 2.8e-76 290.0 200 72.5
Gohir.D09G249400 Gossypium hirsutum HOM05D004991 ORTHO05D006690 6.2e-76 288.9 200 70.5
HPP92_022111 Vanilla planifolia HOM05D004991 ORTHO05D006690 4.0e-75 286.2 200 69.0
CARHR256900 Cardamine hirsuta HOM05D004991 ORTHO05D006690 3.8e-73 279.6 203 70.0
Duzib205G0755 Durio zibethinus HOM05D004991 ORTHO05D006690 6.7e-70 268.9 459 45.3
AagrBONN_evm.TU.Sc2ySwM_344.798 Anthoceros agrestis HOM05D004991 ORTHO05D006690 1.8e-67 260.8 478 37.9
Mapoly0103s0064 Marchantia polymorpha HOM05D004991 ORTHO05D006690 1.8e-67 260.8 455 38.2
unitig_46.g18758 Utricularia gibba HOM05D004991 ORTHO05D006690 6.9e-67 258.8 472 40.3
Pp3c2_28300 Physcomitrium patens HOM05D004991 ORTHO05D006690 1.5e-66 257.7 512 37.7
Pp3c1_10120 Physcomitrium patens HOM05D004991 ORTHO05D006690 2.2e-65 253.8 512 37.7
SMO364G0598 Selaginella moellendorffii HOM05D004991 ORTHO05D006690 6.5e-65 252.3 478 38.7
SEGI_24268 Sequoiadendron giganteum HOM05D004991 ORTHO05D006690 5.5e-64 249.2 204 60.8
Hund11017 Selenicereus undatus HOM05D004991 ORTHO05D006690 7.1e-64 248.8 464 40.5
Sed0002589 Sechium edule HOM05D004991 ORTHO05D006690 1.2e-63 248.1 426 43.2
CBR_g55399 Chara braunii HOM05D004991 ORTHO05D006690 1.3e-62 244.6 396 39.6
Actinidia31763 Actinidia chinensis HOM05D004991 ORTHO05D006690 2.6e-42 177.2 221 52.9
Aqoxy180s003 Aquilegia oxysepala HOM05D004991 ORTHO05D006690 1.4e-40 171.4 224 54.0
Sc17g0004550 Simmondsia chinensis HOM05D004991 ORTHO05D006690 2.4e-35 154.1 228 49.1
MCO05G049 Micromonas commoda HOM05D004991 ORTHO05D006690 3.0e-30 137.1 207 39.6
Hma1.2p1_0502F.1_g167960 Hydrangea macrophylla HOM05D004991 ORTHO05D035817 4.4e-29 133.3 132 59.8
CAN.G141.10 Capsicum annuum HOM05D014572 ORTHO05D016880 9.7e-29 132.1 71 88.7
Zm00001eb390340 Zea mays HOM05D004991 ORTHO05D006690 2.7e-26 124.0 89 67.4
CSS0009087 Camellia sinensis var. sinensis HOM05D004991 ORTHO05D020246 1.5e-24 118.2 102 74.5
Mapoly0175s0021 Marchantia polymorpha HOM05D004991 ORTHO05D006690 2.1e-23 114.4 228 38.2
Mapoly0001s0004 Marchantia polymorpha HOM05D004991 ORTHO05D006690 1.0e-22 112.1 204 39.7
Glyma.02G174600 Glycine max HOM05D004991 ORTHO05D006690 3.0e-22 110.5 131 58.8
FAN06G0285 Fragaria x ananassa HOM05D004991 ORTHO05D020246 1.4e-19 101.7 64 81.2
FAN06G4210 Fragaria x ananassa HOM05D004991 ORTHO05D020246 1.4e-19 101.7 64 81.2
FAN06G2940 Fragaria x ananassa HOM05D004991 ORTHO05D035817 3.4e-13 80.5 83 61.4
FAN06G3183 Fragaria x ananassa HOM05D004991 ORTHO05D035817 3.4e-13 80.5 83 61.4
CAN.G500.73 Capsicum annuum HOM05D000149 ORTHO05D000076 6.1e-07 59.7 56 60.7


User provided reference genes

Program Settings