Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002288g0080 Nicotiana tabacum HOM05D001210 ORTHO05D008784 2.6e-48 194.9 88 100.0
Nitab4.5_0004118g0120 Nicotiana tabacum HOM05D007017 ORTHO05D008784 2.8e-34 148.3 93 74.2
Peaxi162Scf01327g00130 Petunia axillaris HOM05D001210 ORTHO05D001036 1.4e-17 92.8 46 91.3
CAN.G358.139 Capsicum annuum HOM05D001210 ORTHO05D001036 3.1e-17 91.7 46 91.3
GSVIVG01031072001 Vitis vinifera HOM05D001210 ORTHO05D001036 6.9e-17 90.5 46 84.8
Cc07_g08960 Coffea canephora HOM05D001210 ORTHO05D001036 7.7e-16 87.0 73 58.9
Sopen02g030460 Solanum pennellii HOM05D001210 ORTHO05D001036 7.7e-16 87.0 46 84.8
PGSC0003DMG400012676 Solanum tuberosum HOM05D001210 ORTHO05D001036 1.0e-15 86.7 46 84.8
Solyc02g085770.4 Solanum lycopersicum HOM05D001210 ORTHO05D001036 3.8e-15 84.7 46 84.8
Hma1.2p1_0136F.1_g062130 Hydrangea macrophylla HOM05D001210 ORTHO05D001036 5.5e-14 80.9 73 53.4
Migut.H00203 Erythranthe guttata HOM05D001210 ORTHO05D001036 7.2e-14 80.5 46 73.9
CANSAT64G0839 Cannabis sativa HOM05D001210 ORTHO05D001036 1.6e-13 79.3 73 52.1
Cfa007942 Carpinus fangiana HOM05D007017 ORTHO05D008784 2.1e-13 79.0 73 52.1
RcHm_v2.0_Chr2g0163081 Rosa chinensis HOM05D001210 ORTHO05D001036 2.1e-13 79.0 53 67.9
Oeu035120.1 Olea europaea HOM05D001210 ORTHO05D001036 2.7e-13 78.6 46 76.1
QL02p051529 Quercus lobata HOM05D001210 ORTHO05D001036 3.6e-13 78.2 46 78.3
Haze_14134 Corylus avellana HOM05D001210 ORTHO05D001036 4.6e-13 77.8 46 76.1
COL.COLO4_16188 Corchorus olitorius HOM05D001210 ORTHO05D001036 7.9e-13 77.0 73 47.9
TWI74G0790 Tripterygium wilfordii HOM05D001210 ORTHO05D001036 7.9e-13 77.0 73 52.1
CiPaw.03G060100 Carya illinoinensis HOM05D001210 ORTHO05D001036 1.0e-12 76.6 46 69.6
MD17G1074700 Malus domestica HOM05D001210 ORTHO05D001036 1.4e-12 76.3 46 73.9
Aqoxy3G03928 Aquilegia oxysepala HOM05D001210 ORTHO05D001036 3.9e-12 74.7 73 50.7
FAN02G4104 Fragaria x ananassa HOM05D001210 ORTHO05D001036 3.9e-12 74.7 46 69.6
Manes.02G067000 Manihot esculenta HOM05D001210 ORTHO05D001036 3.9e-12 74.7 46 71.7
Ciclev10013040m.g Citrus clementina HOM05D001210 ORTHO05D001036 5.1e-12 74.3 46 69.6
EL10Ac2g04601 Beta vulgaris HOM05D001210 ORTHO05D001036 8.8e-12 73.6 47 68.1
FvH4_6g45320 Fragaria vesca HOM05D001210 ORTHO05D001036 8.8e-12 73.6 46 67.4
FAN14G1925 Fragaria x ananassa HOM05D007017 ORTHO05D008784 8.8e-12 73.6 46 67.4
Potri.017G113000 Populus trichocarpa HOM05D001210 ORTHO05D001036 1.1e-11 73.2 46 67.4
FAN05G2172 Fragaria x ananassa HOM05D007017 ORTHO05D008784 3.3e-11 71.6 46 67.4
DCAR_014903 Daucus carota HOM05D001210 ORTHO05D001036 5.7e-11 70.9 46 67.4
HanXRQChr15g0465961 Helianthus annuus HOM05D001210 ORTHO05D001036 5.7e-11 70.9 46 65.2
CSS0020631 Camellia sinensis var. sinensis HOM05D001210 ORTHO05D001036 7.4e-11 70.5 41 70.7
Cpa.g.sc179.15 Carica papaya HOM05D001210 ORTHO05D001036 7.4e-11 70.5 44 72.7
Lsat_1_v5_gn_2_79701 Lactuca sativa HOM05D001210 ORTHO05D001036 7.4e-11 70.5 43 69.8
TAR629G0915 Trochodendron aralioides HOM05D001210 ORTHO05D001036 7.4e-11 70.5 40 72.5
TAR629G2793 Trochodendron aralioides HOM05D001210 ORTHO05D001036 7.4e-11 70.5 40 72.5
MD09G1085800 Malus domestica HOM05D001210 ORTHO05D001036 4.8e-10 67.8 46 69.6
FAN09G1197 Fragaria x ananassa HOM05D001210 ORTHO05D001036 2.4e-09 65.5 37 73.0
PSO063G4599 Papaver somniferum HOM05D001210 ORTHO05D001036 9.1e-09 63.5 46 60.9
SGA_v2.0_scaffold33G13476 Striga asiatica HOM05D001210 ORTHO05D001036 1.5e-08 62.8 36 69.4
ECA238G4322 Erigeron canadensis HOM05D007017 ORTHO05D008784 1.3e-07 59.7 29 79.3
Hund16128 Selenicereus undatus HOM05D001210 ORTHO05D001036 1.3e-07 59.7 46 52.2
TWI53G0981 Tripterygium wilfordii HOM05D001210 ORTHO05D001036 2.9e-07 58.5 46 60.9
Os05g0381400 Oryza sativa ssp. japonica HOM05D001210 ORTHO05D001036 8.5e-07 57.0 40 52.5
Cpa.g.sc179.19 Carica papaya HOM05D001210 ORTHO05D001036 1.4e-06 56.2 28 82.1
Solyc09g090800.2 Solanum lycopersicum HOM05D001210 ORTHO05D001036 1.9e-06 55.8 38 57.9
Sopen09g033750 Solanum pennellii HOM05D001210 ORTHO05D001036 1.9e-06 55.8 38 57.9
PGSC0003DMG400001503 Solanum tuberosum HOM05D001210 ORTHO05D001036 1.9e-06 55.8 38 57.9
AL1G14240 Arabidopsis lyrata HOM05D001210 ORTHO05D001036 2.5e-06 55.5 38 57.9
AT1G04560 Arabidopsis thaliana HOM05D001210 ORTHO05D001036 2.5e-06 55.5 38 57.9
BraA09t42111Z Brassica rapa HOM05D001210 ORTHO05D001036 4.2e-06 54.7 38 55.3
CiPaw.01G176400 Carya illinoinensis HOM05D001210 ORTHO05D001036 4.2e-06 54.7 40 50.0
PGR031G2597 Punica granatum HOM05D001210 ORTHO05D001036 4.2e-06 54.7 38 55.3
Sc13g0003060 Simmondsia chinensis HOM05D001210 ORTHO05D001036 4.2e-06 54.7 38 44.7
BcaNung05973 Brassica carinata HOM05D001210 ORTHO05D001036 5.5e-06 54.3 38 52.6
BolC8t52746H Brassica oleracea HOM05D001210 ORTHO05D001036 5.5e-06 54.3 38 52.6
CARHR003910 Cardamine hirsuta HOM05D001210 ORTHO05D001036 5.5e-06 54.3 38 55.3
THA.LOC104826101 Tarenaya hassleriana HOM05D001210 ORTHO05D001036 5.5e-06 54.3 38 52.6
Atru.chr4.1894 Acer truncatum HOM05D001210 ORTHO05D001036 7.2e-06 53.9 38 55.3
BolC5t29055H Brassica oleracea HOM05D001210 ORTHO05D001036 7.2e-06 53.9 38 52.6
BraA10t42568Z Brassica rapa HOM05D001210 ORTHO05D001036 7.2e-06 53.9 38 52.6
CAN.G305.31 Capsicum annuum HOM05D001210 ORTHO05D001036 7.2e-06 53.9 37 56.8
QL06p021785 Quercus lobata HOM05D001210 ORTHO05D001036 7.2e-06 53.9 38 52.6
Sc25g0004860 Simmondsia chinensis HOM05D001210 ORTHO05D001036 7.2e-06 53.9 40 45.0
AUR62035368 Chenopodium quinoa HOM05D001210 ORTHO05D001036 9.4e-06 53.5 41 53.7
AUR62035880 Chenopodium quinoa HOM05D001210 ORTHO05D001036 9.4e-06 53.5 41 53.7


User provided reference genes

Program Settings