Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002286g0090 Nicotiana tabacum HOM05D003361 ORTHO05D003760 2.8e-130 469.9 595 100.0
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 1.6e-88 331.3 224 86.2
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 2.6e-83 313.9 179 83.8
PGSC0003DMG400030688 Solanum tuberosum HOM05D003361 ORTHO05D003760 3.8e-82 310.1 224 83.0
Solyc07g007420.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 6.4e-82 309.3 179 83.2
Peaxi162Scf00088g00618 Petunia axillaris HOM05D003361 ORTHO05D003760 3.5e-72 276.9 340 70.0
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 2.9e-58 230.7 300 56.7
Peaxi162Scf01694g00019 Petunia axillaris HOM05D003361 ORTHO05D003760 4.9e-58 229.9 180 64.4
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 4.2e-57 226.9 300 55.3
Nitab4.5_0009284g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.6e-56 224.9 173 86.7
Nitab4.5_0002329g0140 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.5e-51 208.4 177 59.9
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 8.5e-50 202.6 178 57.9
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 7.2e-49 199.5 170 60.0
Nitab4.5_0008536g0030 Nicotiana tabacum HOM05D003361 ORTHO05D003760 7.2e-49 199.5 226 65.9
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 1.6e-48 198.4 177 55.4
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 1.6e-48 198.4 171 57.9
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 2.7e-48 197.6 177 55.4
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 3.6e-48 197.2 224 48.7
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 3.6e-48 197.2 222 48.6
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 3.6e-48 197.2 179 57.5
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 7.9e-48 196.1 180 57.8
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 5.1e-47 193.4 171 58.5
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 1.5e-46 191.8 171 59.1
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 4.3e-46 190.3 169 58.0
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 5.7e-46 189.9 164 58.5
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 9.7e-46 189.1 170 60.0
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 2.2e-45 188.0 170 58.2
Sc08g0006030 Simmondsia chinensis HOM05D003361 ORTHO05D003760 2.2e-45 188.0 172 59.3
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 2.8e-45 187.6 169 57.4
Cc06_g07660 Coffea canephora HOM05D003361 ORTHO05D003760 3.7e-45 187.2 273 41.4
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 3.7e-45 187.2 170 57.6
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 6.3e-45 186.4 171 56.7
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 1.1e-44 185.7 170 56.5
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 1.1e-44 185.7 169 56.8
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 1.8e-44 184.9 169 56.2
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.4e-44 184.5 171 57.3
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 3.1e-44 184.1 170 56.5
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 3.1e-44 184.1 169 56.2
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 3.1e-44 184.1 169 56.2
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 3.1e-44 184.1 175 57.1
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 3.1e-44 184.1 168 56.0
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 4.1e-44 183.7 171 56.7
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 4.1e-44 183.7 169 55.6
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 4.1e-44 183.7 169 56.2
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 4.1e-44 183.7 169 56.2
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 4.1e-44 183.7 169 55.6
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 5.3e-44 183.3 171 57.9
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 5.3e-44 183.3 179 52.5
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 5.3e-44 183.3 169 56.8
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 6.9e-44 183.0 169 54.4
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 6.9e-44 183.0 169 55.6
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 9.1e-44 182.6 224 46.0
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 9.1e-44 182.6 169 55.6
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 9.1e-44 182.6 169 56.2
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 1.5e-43 181.8 170 57.1
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 1.5e-43 181.8 170 57.1
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 1.5e-43 181.8 170 55.9
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 2.0e-43 181.4 170 55.9
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 2.0e-43 181.4 170 55.9
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 3.4e-43 180.6 169 55.6
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 3.4e-43 180.6 170 55.3
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 4.5e-43 180.3 170 53.5
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 4.5e-43 180.3 170 53.5
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 4.5e-43 180.3 171 56.7
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 1.0e-42 179.1 169 56.2
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 1.0e-42 179.1 177 51.4
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 1.0e-42 179.1 171 55.0
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 1.3e-42 178.7 170 57.1
HPP92_017331 Vanilla planifolia HOM05D003361 ORTHO05D003760 1.3e-42 178.7 180 53.9
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 1.7e-42 178.3 170 54.7
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 1.7e-42 178.3 170 54.7
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 1.7e-42 178.3 168 55.4
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 2.2e-42 177.9 170 54.1
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 2.2e-42 177.9 170 55.9
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 2.2e-42 177.9 170 54.7
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 3.8e-42 177.2 170 53.5
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 3.8e-42 177.2 173 54.3
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 3.8e-42 177.2 170 54.1
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 3.8e-42 177.2 170 56.5
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 3.8e-42 177.2 230 58.3
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 5.0e-42 176.8 171 55.6
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 6.5e-42 176.4 170 55.3
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 6.5e-42 176.4 169 53.3
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 6.5e-42 176.4 169 54.4
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 8.5e-42 176.0 170 55.9
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 1.4e-41 175.3 224 56.7
TPR.G7990 Trifolium pratense HOM05D003361 ORTHO05D003760 1.4e-41 175.3 229 52.0
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 1.9e-41 174.9 178 55.6
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 2.5e-41 174.5 170 55.3
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 2.5e-41 174.5 170 54.1
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 3.2e-41 174.1 172 54.7
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 3.2e-41 174.1 170 53.5
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 3.2e-41 174.1 182 53.8
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 3.2e-41 174.1 169 54.4
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 3.2e-41 174.1 169 54.4
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 3.2e-41 174.1 172 54.7
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 4.2e-41 173.7 224 53.6
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 4.2e-41 173.7 170 51.8
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 4.2e-41 173.7 170 54.1
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 4.2e-41 173.7 164 54.3
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 5.5e-41 173.3 169 55.6
arahy.Tifrunner.gnm1.ann1.MWAB5B Arachis hypogaea HOM05D003361 ORTHO05D003760 5.5e-41 173.3 169 55.6
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 5.5e-41 173.3 175 56.6
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 5.5e-41 173.3 170 54.1
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 7.2e-41 172.9 230 53.0
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 7.2e-41 172.9 175 52.0
Ah.09g224100 Amaranthus hybridus HOM05D003361 ORTHO05D003760 9.4e-41 172.6 171 53.2
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 9.4e-41 172.6 170 54.1
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 9.4e-41 172.6 171 52.0
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 1.2e-40 172.2 170 53.5
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 1.6e-40 171.8 170 54.1
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 2.1e-40 171.4 171 51.5
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 2.1e-40 171.4 169 53.8
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 2.7e-40 171.0 175 52.0
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 2.7e-40 171.0 170 53.5
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 3.6e-40 170.6 179 48.0
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 7.9e-40 169.5 169 52.1
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 7.9e-40 169.5 169 54.4
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 7.9e-40 169.5 171 55.6
Phvul.003G172400 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 2.3e-39 167.9 171 53.8
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 2.3e-39 167.9 179 50.8
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 5.1e-39 166.8 164 54.9
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 6.7e-39 166.4 174 51.7
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 6.7e-39 166.4 170 50.6
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 6.7e-39 166.4 168 50.6
PSO170G6803 Papaver somniferum HOM05D003361 ORTHO05D003760 6.7e-39 166.4 178 48.9
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 8.8e-39 166.0 177 52.0
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 8.8e-39 166.0 171 52.6
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 1.5e-38 165.2 170 52.9
PSO017G3211 Papaver somniferum HOM05D003361 ORTHO05D003760 1.5e-38 165.2 176 48.9
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 2.0e-38 164.9 170 51.8
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 2.0e-38 164.9 163 55.8
SHI02098 Sapria himalayana HOM05D003361 ORTHO05D003760 2.0e-38 164.9 180 49.4
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 7.4e-38 162.9 171 49.7
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 9.7e-38 162.5 171 48.5
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 1.3e-37 162.2 171 51.5
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 2.8e-37 161.0 169 49.7
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 3.7e-37 160.6 170 50.0
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 3.7e-37 160.6 171 49.7
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 4.8e-37 160.2 171 49.1
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 4.8e-37 160.2 171 48.5
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 2.4e-36 157.9 169 49.7
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 2.4e-36 157.9 171 48.0
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 3.1e-36 157.5 171 49.1
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 5.3e-36 156.8 171 48.5
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 5.3e-36 156.8 171 48.5
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 5.3e-36 156.8 171 50.9
Psat1g109200 Pisum sativum HOM05D003361 ORTHO05D003760 5.3e-36 156.8 179 46.9
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 6.9e-36 156.4 171 48.0
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 6.9e-36 156.4 171 48.0
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 2.0e-35 154.8 171 48.0
Os02g0613200 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 2.5e-33 147.9 174 48.3
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 1.2e-32 145.6 177 49.2
SEGI_28212 Sequoiadendron giganteum HOM05D003361 ORTHO05D003760 2.7e-32 144.4 171 45.0
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 7.9e-32 142.9 127 57.5
Zm00001eb078100 Zea mays HOM05D003361 ORTHO05D003760 1.8e-31 141.7 174 44.3
Zm00001eb247040 Zea mays HOM05D003361 ORTHO05D003760 3.9e-31 140.6 167 47.3
HanXRQChr09g0274781 Helianthus annuus HOM05D003361 ORTHO05D003760 5.2e-31 140.2 151 48.3
Os04g0503500 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 3.3e-30 137.5 175 45.1
Pp3c4_3150 Physcomitrium patens HOM05D003361 ORTHO05D003760 5.3e-28 130.2 232 49.6
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 2.6e-27 127.9 121 52.1
Duzib187G1093 Durio zibethinus HOM05D003361 ORTHO05D003760 1.6e-24 118.6 103 55.3
Glyma.13G367200 Glycine max HOM05D003361 ORTHO05D003760 1.8e-23 115.2 137 46.7
unitig_699.g19089 Utricularia gibba HOM05D003361 ORTHO05D003760 3.0e-23 114.4 190 38.4
Duzib150G0304 Durio zibethinus HOM05D003361 ORTHO05D003760 4.0e-23 114.0 149 62.4
Pp3c8_1510 Physcomitrium patens HOM05D003361 ORTHO05D003760 6.7e-23 113.2 178 36.5
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 3.3e-22 110.9 95 58.9
AagrBONN_evm.TU.Sc2ySwM_362.1382 Anthoceros agrestis HOM05D003361 ORTHO05D003760 3.7e-21 107.5 170 36.5
SMO200G0229 Selaginella moellendorffii HOM05D003361 ORTHO05D003760 3.7e-21 107.5 180 33.9
arahy.Tifrunner.gnm1.ann1.TB3UR8 Arachis hypogaea HOM05D003361 ORTHO05D003760 1.4e-20 105.5 130 43.8
arahy.Tifrunner.gnm1.ann1.YII6YD Arachis hypogaea HOM05D003361 ORTHO05D003760 1.4e-20 105.5 130 43.8
Mapoly0032s0095 Marchantia polymorpha HOM05D003361 ORTHO05D003760 4.5e-19 100.5 224 36.2
CAN.G509.10 Capsicum annuum HOM05D003361 ORTHO05D003760 1.3e-18 99.0 59 81.4
Psat0s520g0120 Pisum sativum HOM05D003361 ORTHO05D003760 1.1e-12 79.3 67 55.2
Glyma.15G006200 Glycine max HOM05D003361 ORTHO05D003760 7.0e-12 76.6 99 47.5
SGA_v2.0_scaffold11G05885 Striga asiatica HOM05D003361 ORTHO05D003760 1.3e-10 72.4 123 43.9
CAN.G1597.4 Capsicum annuum HOM05D001768 ORTHO05D001907 4.7e-08 63.9 48 60.4
Oeu027837.1 Olea europaea HOM05D003361 ORTHO05D003760 2.3e-07 61.6 47 66.0
Solyc07g007400.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 3.0e-07 61.2 80 55.0
Actinidia08955 Actinidia chinensis HOM05D003361 ORTHO05D003760 2.0e-06 58.5 46 63.0


User provided reference genes

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