Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 4.9e-177 624.4 322 100.0
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.1e-168 596.7 301 95.7
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 3.9e-150 535.0 296 88.2
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.1e-144 516.9 298 83.9
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.9e-144 516.2 298 83.9
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 4.2e-144 515.0 296 83.4
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 2.7e-143 512.3 300 84.3
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 8.4e-121 437.6 297 71.4
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 1.9e-120 436.4 291 73.2
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.6e-116 423.3 294 69.4
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.1e-115 420.6 289 70.9
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 1.1e-115 420.6 300 68.7
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 2.0e-114 416.4 279 72.0
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 5.9e-114 414.8 297 69.4
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.9e-112 409.8 290 66.9
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 1.9e-112 409.8 292 67.5
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 2.5e-112 409.5 298 67.4
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 4.2e-112 408.7 298 68.5
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 5.5e-112 408.3 294 65.3
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 1.2e-111 407.1 292 67.5
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 1.2e-111 407.1 285 67.4
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 3.6e-111 405.6 293 68.6
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 3.6e-111 405.6 293 66.6
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 6.1e-111 404.8 293 68.3
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 6.1e-111 404.8 302 67.9
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.0e-110 404.1 283 69.3
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 1.8e-110 403.3 288 68.8
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.8e-110 403.3 274 70.1
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 3.9e-110 402.1 292 70.5
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 3.9e-110 402.1 298 66.1
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 5.1e-110 401.7 294 67.7
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 5.1e-110 401.7 299 67.2
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 6.7e-110 401.4 266 71.8
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.1e-109 400.6 285 66.0
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.1e-109 400.6 272 69.9
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.5e-109 400.2 295 66.8
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 3.3e-109 399.1 290 66.2
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.3e-109 398.7 288 65.3
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 4.3e-109 398.7 296 66.2
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 5.7e-109 398.3 295 66.4
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 7.4e-109 397.9 284 66.2
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 9.7e-109 397.5 298 65.1
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.3e-108 397.1 295 64.1
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.3e-108 397.1 295 64.1
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 2.8e-108 396.0 294 67.0
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 3.7e-108 395.6 292 66.8
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.3e-108 394.8 289 67.1
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 1.8e-107 393.3 252 72.6
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.8e-107 393.3 252 72.6
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.4e-107 392.9 287 66.2
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 3.1e-107 392.5 286 67.5
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 3.1e-107 392.5 299 67.2
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 4.1e-107 392.1 275 65.8
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.1e-107 392.1 268 68.3
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 6.9e-107 391.3 275 67.3
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.0e-106 389.8 271 68.6
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 2.0e-106 389.8 291 65.6
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 2.0e-106 389.8 290 64.5
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.6e-106 389.4 295 66.1
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 5.9e-106 388.3 291 65.3
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 1.7e-105 386.7 285 65.6
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 8.5e-105 384.4 291 63.2
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 1.4e-104 383.6 293 63.1
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 1.4e-104 383.6 290 64.5
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.9e-104 383.3 296 63.9
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 5.5e-104 381.7 286 67.1
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 4.7e-103 378.6 289 64.4
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 6.1e-103 378.3 299 62.2
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.0e-102 377.5 232 77.2
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.4e-102 377.1 291 62.2
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 3.0e-102 375.9 293 62.5
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 5.1e-102 375.2 294 63.3
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 3.3e-101 372.5 244 74.2
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 4.4e-101 372.1 293 61.4
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 1.3e-100 370.5 263 65.8
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 2.8e-100 369.4 299 60.5
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 5.3e-99 365.2 265 64.5
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.6e-98 363.6 297 58.9
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 1.7e-97 360.1 296 60.1
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 2.2e-97 359.8 244 70.9
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 9.7e-93 344.4 240 72.1
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.7e-92 343.6 266 64.7
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.2e-92 343.2 289 61.6
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.8e-92 342.0 232 70.3
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 1.4e-91 340.5 294 59.2
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 3.1e-91 339.3 289 55.0
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 7.7e-90 334.7 378 44.4
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.3e-89 334.0 277 54.9
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 2.5e-88 329.7 239 64.0
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.6e-87 327.0 227 66.5
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.6e-87 327.0 286 52.4
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.6e-87 327.0 275 57.5
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 8.0e-87 324.7 265 57.7
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 2.3e-86 323.2 239 64.0
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 6.8e-86 321.6 281 55.9
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 7.5e-85 318.2 265 56.6
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 5.9e-82 308.5 269 56.5
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 2.2e-81 306.6 289 54.7
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 4.2e-80 302.4 282 53.2
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 7.2e-80 301.6 255 56.9
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 9.4e-80 301.2 269 55.0
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 9.4e-80 301.2 268 54.9
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 9.4e-80 301.2 269 55.0
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 9.4e-80 301.2 269 55.0
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 8.0e-79 298.1 258 56.6
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.0e-78 297.7 269 54.6
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 3.0e-78 296.2 275 53.5
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 1.3e-76 290.8 271 52.8
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 3.7e-76 289.3 227 60.4
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 1.4e-75 287.3 260 54.2
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.6e-74 283.9 210 62.9
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 2.7e-74 283.1 267 57.3
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.3e-73 280.8 218 62.4
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 5.0e-73 278.9 283 48.4
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 2.1e-71 273.5 230 57.4
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 4.4e-69 265.8 298 47.0
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 4.6e-66 255.8 213 56.8
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.7e-65 253.8 290 47.2
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 2.6e-61 240.0 232 50.9
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 1.4e-59 234.2 276 45.7
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 6.6e-57 225.3 137 75.9
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 1.9e-56 223.8 238 48.7
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.1e-51 208.0 204 56.9
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 7.1e-51 205.3 229 44.5
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 9.2e-43 178.3 139 61.9
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 2.6e-37 160.2 261 36.4
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 4.5e-29 132.9 124 49.2
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.3e-28 131.3 97 69.1
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 5.4e-27 125.9 217 34.6
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 1.7e-20 104.4 166 34.9
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 2.9e-20 103.6 78 62.8
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 1.8e-17 94.4 158 34.8
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 3.0e-17 93.6 54 74.1
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.1e-14 85.1 78 52.6
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 2.6e-13 80.5 49 79.6
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 3.4e-13 80.1 43 79.1
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 4.5e-13 79.7 106 41.5
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 1.3e-07 61.6 199 27.1


User provided reference genes

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