Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 4.7e-300 1033.9 563 100.0
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 3.1e-288 994.6 563 96.4
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 1.3e-254 882.9 561 84.3
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 2.0e-250 869.0 571 84.9
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 2.0e-250 869.0 571 84.9
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 2.0e-250 869.0 571 84.6
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 5.8e-250 867.5 571 82.0
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 9.0e-211 737.3 567 68.8
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 4.5e-210 734.9 561 68.8
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 6.7e-206 721.1 563 68.4
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 2.6e-202 709.1 561 68.8
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.7e-201 706.4 559 66.5
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 2.2e-201 706.1 565 66.9
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 1.2e-199 700.3 552 69.0
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 5.1e-198 694.9 563 65.9
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 1.5e-197 693.3 560 66.6
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 2.0e-197 693.0 550 66.7
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 2.5e-197 692.6 560 68.0
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 4.3e-197 691.8 566 65.9
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 9.7e-197 690.6 551 68.8
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 6.3e-196 688.0 564 67.6
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.2e-194 683.7 556 66.0
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 2.6e-194 682.6 556 66.2
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 5.9e-194 681.4 561 64.9
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.9e-192 676.4 562 64.8
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 3.6e-191 672.2 564 63.8
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.4e-190 670.2 549 65.4
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 3.9e-190 668.7 562 63.9
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 5.1e-190 668.3 561 64.3
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 5.1e-190 668.3 559 64.9
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 9.7e-189 664.1 660 57.1
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 3.7e-188 662.1 575 63.5
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 1.1e-187 660.6 559 64.0
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 1.1e-187 660.6 549 63.9
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.4e-187 659.4 555 64.3
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 2.4e-187 659.4 557 64.1
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 9.1e-187 657.5 558 63.4
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 1.2e-186 657.1 580 63.8
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 3.5e-186 655.6 553 65.8
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 5.9e-186 654.8 557 63.7
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.2e-183 647.1 575 62.1
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.1e-183 646.4 559 63.1
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 2.7e-183 646.0 560 62.3
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.0e-183 644.4 575 61.9
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.9e-182 642.1 575 61.7
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 5.2e-182 641.7 570 61.8
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 8.8e-182 641.0 554 62.6
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-181 639.8 567 62.3
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 1.3e-180 637.1 557 62.8
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.3e-180 637.1 565 61.6
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 2.8e-180 636.0 575 61.0
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 9.1e-179 630.9 556 61.7
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 1.6e-178 630.2 554 61.0
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.6e-178 630.2 551 61.2
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 5.9e-178 628.2 562 61.9
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 7.7e-178 627.9 552 63.0
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 1.1e-176 624.0 567 60.0
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 1.5e-176 623.6 555 61.3
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 3.6e-175 619.0 549 61.6
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 4.7e-175 618.6 580 58.4
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.8e-174 614.4 563 60.2
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.2e-173 614.0 556 59.7
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 1.5e-173 613.6 568 59.5
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.3e-172 610.5 553 59.7
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.7e-172 610.1 564 60.3
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 4.8e-172 608.6 563 60.0
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 8.3e-172 607.8 573 57.8
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 1.1e-171 607.4 558 59.0
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 2.4e-171 606.3 566 59.0
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 9.1e-171 604.4 566 59.2
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 2.0e-170 603.2 568 59.2
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 2.0e-170 603.2 551 62.4
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 3.8e-169 599.0 557 58.5
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 8.5e-169 597.8 559 60.1
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 1.1e-168 597.4 559 60.8
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.2e-168 595.5 559 60.8
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 4.2e-168 595.5 556 59.4
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 9.4e-168 594.3 557 58.9
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 2.0e-165 586.6 586 57.8
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 4.4e-165 585.5 586 58.0
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 9.8e-165 584.3 553 58.0
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 3.7e-164 582.4 552 58.5
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 7.0e-163 578.2 572 58.2
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 3.8e-161 572.4 552 56.2
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 1.2e-154 550.8 569 54.0
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 2.0e-154 550.1 577 53.7
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 1.0e-153 547.7 578 53.3
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.7e-153 547.0 561 53.3
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 5.0e-153 545.4 418 71.1
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.1e-152 544.3 581 52.0
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 4.3e-152 542.3 572 54.2
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 4.3e-152 542.3 564 55.0
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 7.3e-152 541.6 564 53.9
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 1.8e-150 537.0 555 52.6
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 2.3e-150 536.6 555 52.6
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 1.1e-147 527.7 563 52.6
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 2.4e-147 526.6 547 53.4
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 3.2e-147 526.2 574 50.3
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 7.0e-147 525.0 573 51.1
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 1.6e-146 523.9 552 52.0
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 6.4e-140 501.9 445 60.2
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 1.0e-137 494.6 572 51.6
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.2e-133 481.1 431 60.8
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 2.0e-133 480.3 559 51.3
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.8e-130 468.4 525 52.8
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.6e-129 465.3 497 56.3
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 1.1e-128 464.5 568 48.6
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 4.3e-128 462.6 373 66.2
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 4.3e-128 462.6 551 47.9
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 7.6e-125 451.8 560 48.6
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.3e-124 451.1 431 59.4
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.2e-119 432.2 309 71.5
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 3.2e-115 419.9 553 43.6
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 6.0e-114 415.6 281 75.1
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 1.3e-111 407.9 551 43.4
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 7.9e-106 388.7 558 41.2
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 6.7e-105 385.6 554 43.9
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 4.1e-94 349.7 382 49.7
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-88 330.5 460 46.5
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 3.2e-83 313.5 305 56.7
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 1.5e-80 304.7 462 43.9
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 6.3e-79 299.3 346 52.3
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.5e-77 294.7 158 98.7
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.4e-73 281.6 495 41.4
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-69 267.7 225 63.6
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 5.2e-65 253.1 174 70.1
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-62 244.6 492 38.2
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.5e-61 240.0 215 62.8
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 1.1e-59 235.3 418 37.3
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.9e-44 184.1 149 65.8
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 1.9e-43 181.4 139 67.6
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-42 178.3 138 65.9
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 8.0e-42 176.0 319 39.5
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-38 164.5 118 70.3
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 3.2e-38 164.1 145 55.9
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 2.7e-37 161.0 118 68.6
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 7.0e-30 136.3 458 30.1
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-23 115.2 184 41.8
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-23 115.2 86 68.6
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 1.7e-23 115.2 88 68.2
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-20 105.5 288 32.3
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 3.9e-20 104.0 100 51.0
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 1.5e-16 92.0 56 73.2
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 1.5e-16 92.0 74 62.2
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-09 68.9 43 72.1
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-09 68.6 48 68.8
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 4.0e-09 67.4 157 36.9
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 2.6e-08 64.7 56 60.7
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 7.6e-08 63.2 36 77.8
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 9.9e-08 62.8 44 63.6
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 1.3e-07 62.4 67 53.7
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-07 61.6 52 61.5
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-07 61.6 39 74.4
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 4.9e-07 60.5 50 60.0
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 8.4e-07 59.7 182 37.9
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.9e-06 58.5 46 63.0
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.9e-06 58.5 162 34.6
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 5.4e-06 57.0 170 34.7


User provided reference genes

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