Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.1e-142 510.0 253 100.0
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 7.0e-70 268.1 258 59.7
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.1e-67 260.8 263 58.6
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 1.3e-60 237.3 149 79.2
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.4e-57 227.3 192 63.0
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 2.8e-55 219.5 214 56.5
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 3.7e-55 219.2 214 56.1
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 1.2e-53 214.2 258 52.3
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 1.1e-51 207.6 206 56.8
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 1.1e-51 207.6 204 54.9
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 2.1e-50 203.4 209 51.7
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 8.0e-50 201.4 206 54.4
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 5.7e-48 195.3 227 52.0
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.8e-46 190.3 227 51.1
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 6.6e-44 181.8 211 46.0
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.9e-43 180.3 207 48.8
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 1.0e-41 174.5 239 44.4
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 6.8e-41 171.8 192 44.8
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 2.6e-40 169.9 220 44.1
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 4.4e-40 169.1 206 42.7
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 7.5e-40 168.3 171 49.7
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 9.8e-40 167.9 170 50.6
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.2e-39 166.8 170 50.0
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 6.4e-39 165.2 210 44.3
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 8.3e-39 164.9 96 88.5
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.1e-38 164.5 178 48.3
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 1.1e-38 164.5 228 42.1
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.4e-38 164.1 172 50.6
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 1.8e-38 163.7 172 47.7
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 1.8e-38 163.7 172 47.7
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.8e-38 163.7 164 53.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.8e-38 163.7 205 41.5
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 3.2e-38 162.9 161 51.6
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 4.1e-38 162.5 169 52.7
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 5.4e-38 162.2 210 42.9
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 5.4e-38 162.2 210 42.9
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 7.0e-38 161.8 172 47.1
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 7.0e-38 161.8 172 47.1
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 9.2e-38 161.4 178 48.3
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 2.0e-37 160.2 216 43.5
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.0e-37 160.2 162 50.6
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 2.7e-37 159.8 164 53.7
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 2.7e-37 159.8 177 50.3
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 3.5e-37 159.5 164 51.8
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 3.5e-37 159.5 214 43.0
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 4.6e-37 159.1 164 48.2
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 6.0e-37 158.7 230 39.1
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 6.0e-37 158.7 164 52.4
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.0e-36 157.9 162 48.8
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.3e-36 157.5 165 47.9
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 3.0e-36 156.4 173 47.4
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 3.0e-36 156.4 215 40.9
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 3.9e-36 156.0 172 50.6
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 3.9e-36 156.0 163 50.3
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 1.1e-35 154.5 176 46.0
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.1e-35 154.5 174 46.6
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 1.5e-35 154.1 170 47.6
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.9e-35 153.7 171 49.1
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 2.5e-35 153.3 163 50.3
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 3.3e-35 152.9 174 47.7
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 4.3e-35 152.5 230 40.4
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 4.3e-35 152.5 177 48.0
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 4.3e-35 152.5 177 48.0
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 4.3e-35 152.5 196 42.9
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 5.6e-35 152.1 190 43.2
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 5.6e-35 152.1 190 43.2
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 7.3e-35 151.8 190 43.2
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 7.3e-35 151.8 174 48.3
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 9.5e-35 151.4 188 44.1
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 1.6e-34 150.6 163 47.9
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 2.1e-34 150.2 172 43.6
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 2.1e-34 150.2 172 43.6
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 2.8e-34 149.8 161 46.0
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 2.8e-34 149.8 168 47.0
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 3.6e-34 149.4 213 39.0
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 8.0e-34 148.3 176 45.5
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 8.0e-34 148.3 171 45.6
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.1e-33 147.9 223 39.0
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.8e-33 147.1 174 46.0
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 1.8e-33 147.1 230 39.1
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.8e-33 147.1 180 45.6
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 3.1e-33 146.4 224 39.3
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 3.1e-33 146.4 176 44.3
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 3.1e-33 146.4 182 46.2
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 8.9e-33 144.8 177 44.1
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 8.9e-33 144.8 177 44.6
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 2.0e-32 143.7 156 48.7
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.0e-32 143.7 168 45.2
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 2.6e-32 143.3 168 44.6
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.6e-32 143.3 171 43.9
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 3.4e-32 142.9 185 42.7
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.8e-32 142.1 171 43.9
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 9.8e-32 141.4 171 44.4
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.7e-31 140.6 175 41.1
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 2.9e-31 139.8 135 60.0
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 6.4e-31 138.7 175 42.3
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.1e-30 137.9 175 42.3
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.4e-30 137.5 166 44.0
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 1.4e-30 137.5 221 38.0
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 1.4e-30 137.5 221 38.0
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 1.4e-30 137.5 192 41.1
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.9e-30 137.1 192 39.6
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 1.9e-30 137.1 172 43.6
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.4e-30 136.7 221 38.5
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.4e-30 136.7 221 38.5
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 9.2e-30 134.8 174 44.3
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.6e-29 134.0 168 41.7
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 3.5e-29 132.9 166 42.2
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 7.8e-29 131.7 161 42.2
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 7.8e-29 131.7 213 38.0
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.0e-28 131.3 172 43.6
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.3e-28 131.0 156 50.6
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.3e-28 131.0 169 42.6
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 6.6e-28 128.6 191 38.7
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 6.6e-28 128.6 191 38.7
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 6.6e-28 128.6 176 39.2
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 4.3e-27 125.9 194 38.7
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 9.5e-27 124.8 168 41.7
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.2e-26 124.4 168 41.7
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.6e-26 124.0 198 35.9
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 2.1e-26 123.6 192 40.6
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 4.7e-26 122.5 164 39.6
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.2e-26 122.1 197 35.0
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 1.1e-25 121.3 171 43.3
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 1.1e-25 121.3 197 38.6
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.1e-25 119.8 185 37.8
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 3.1e-25 119.8 197 36.5
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 8.9e-25 118.2 186 34.9
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.2e-24 117.9 192 38.5
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.5e-24 117.5 192 40.6
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 2.0e-24 117.1 167 40.1
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 2.6e-24 116.7 189 39.7
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 7.5e-24 115.2 197 37.1
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.7e-23 114.0 230 37.4
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 8.3e-23 111.7 222 35.6
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.1e-22 111.3 138 38.4
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.9e-22 110.5 233 34.8
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 2.4e-22 110.2 210 36.2
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 5.4e-22 109.0 182 36.3
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 5.4e-22 109.0 198 33.8
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.6e-21 107.5 138 37.0
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.6e-21 107.5 165 40.6
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.5e-21 106.3 175 34.3
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 4.6e-21 105.9 226 32.7
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 6.0e-21 105.5 138 37.0
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 7.8e-21 105.1 173 35.8
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 7.8e-21 105.1 197 31.0
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.3e-20 104.4 172 32.0
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 1.1e-19 101.3 159 34.6
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.3e-19 99.8 193 34.2
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 4.3e-19 99.4 161 36.0
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.4e-17 94.4 156 37.2
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.4e-17 93.6 201 33.3
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 3.8e-15 86.3 180 31.1
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.4e-14 84.3 162 32.7
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.9e-14 84.0 183 31.1
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.6e-13 80.9 62 58.1
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 5.1e-12 75.9 170 31.2
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.3e-11 73.2 171 31.0
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.1e-10 70.5 122 36.9
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 6.2e-10 68.9 71 49.3
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 6.2e-10 68.9 89 40.4
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 2.9e-07 60.1 128 30.5


User provided reference genes

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