Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.1e-231 805.4 442 100.0
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 8.4e-212 740.3 442 90.0
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 2.3e-177 625.9 441 77.6
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.5e-160 570.1 444 74.8
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 1.2e-125 454.1 461 58.8
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 5.4e-118 428.7 436 58.0
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.3e-116 423.3 469 55.2
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 8.6e-116 421.4 469 55.0
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 7.5e-112 408.3 399 59.6
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 4.1e-110 402.5 435 55.6
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 3.6e-106 389.4 448 53.1
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 6.2e-106 388.7 434 55.5
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 8.1e-106 388.3 396 58.3
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 2.0e-104 383.6 455 52.1
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.7e-103 380.6 446 51.8
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.2e-101 374.4 471 51.0
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 4.6e-101 372.5 405 56.5
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 3.0e-100 369.8 444 52.7
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 5.6e-99 365.5 458 50.4
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.6e-98 364.0 441 52.6
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.6e-98 364.0 441 52.6
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 2.8e-98 363.2 468 46.6
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 8.9e-97 358.2 444 50.2
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.5e-96 357.5 448 51.6
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 2.0e-96 357.1 453 48.6
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 2.0e-96 357.1 464 49.6
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.3e-95 354.4 441 52.2
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 1.3e-95 354.4 475 49.1
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.1e-94 351.3 452 49.3
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 1.4e-94 350.9 456 50.2
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 1.9e-94 350.5 403 52.6
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 2.4e-94 350.1 453 47.9
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 3.2e-94 349.7 471 50.7
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 1.2e-93 347.8 468 46.6
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.6e-93 347.4 454 49.6
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 7.8e-93 345.1 479 47.8
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 2.3e-92 343.6 438 50.2
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 3.0e-92 343.2 447 49.7
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 3.9e-92 342.8 470 47.7
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.1e-91 341.3 443 47.9
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.9e-91 340.5 440 48.2
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 4.3e-91 339.3 419 49.6
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 3.6e-90 336.3 453 49.4
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.1e-89 334.7 458 48.0
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 5.3e-89 332.4 442 48.2
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 9.0e-89 331.6 414 50.7
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 1.2e-88 331.3 401 53.1
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.2e-88 331.3 429 50.1
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.5e-88 330.9 418 49.0
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 3.4e-88 329.7 468 46.6
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 4.4e-88 329.3 417 48.7
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.3e-87 327.8 491 46.0
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 4.9e-87 325.9 430 48.6
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 6.4e-87 325.5 495 45.7
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 4.2e-86 322.8 401 49.4
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 1.2e-85 321.2 471 45.2
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.1e-85 320.5 430 50.0
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 3.5e-85 319.7 446 45.7
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 3.0e-84 316.6 444 47.7
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 5.1e-84 315.8 453 45.0
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.3e-82 311.2 417 47.5
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.1e-81 308.1 414 48.8
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.2e-80 304.7 441 45.6
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 1.7e-79 300.8 422 47.6
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 4.9e-79 299.3 457 45.7
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 5.4e-78 295.8 501 41.5
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 6.0e-77 292.4 399 47.9
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 6.0e-77 292.4 438 44.3
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.0e-76 291.6 409 47.2
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 1.5e-75 287.7 426 46.9
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 1.3e-74 284.6 399 47.6
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 3.7e-74 283.1 454 44.3
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 3.7e-74 283.1 456 45.0
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.1e-73 281.6 389 47.0
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.8e-73 280.8 446 41.7
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.4e-73 280.4 412 45.9
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 1.2e-72 278.1 444 43.7
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.5e-72 277.7 411 45.5
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 4.5e-72 276.2 390 44.1
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.6e-72 275.4 466 41.8
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.2e-70 269.6 320 53.1
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 5.5e-70 269.2 419 43.4
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 3.5e-69 266.5 399 43.4
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.8e-68 264.2 409 44.0
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 2.3e-68 263.8 451 43.7
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 8.7e-68 261.9 387 44.7
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.3e-66 258.1 425 42.4
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.9e-63 246.9 277 50.9
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 5.0e-63 246.1 430 44.0
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 8.4e-63 245.4 402 44.5
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 4.2e-62 243.0 387 43.4
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 6.1e-61 239.2 448 40.4
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.8e-60 237.7 413 42.1
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.1e-60 236.1 356 44.7
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 1.1e-59 235.0 460 38.3
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 1.5e-59 234.6 443 40.0
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 9.7e-59 231.9 393 42.7
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 1.6e-58 231.1 460 40.7
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 4.1e-57 226.5 418 40.9
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.5e-56 224.6 351 44.4
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.6e-56 223.8 459 41.2
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.3e-55 221.5 401 43.1
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 1.4e-54 218.0 437 38.0
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 4.2e-54 216.5 342 43.9
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 3.6e-53 213.4 341 41.3
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 7.9e-53 212.2 348 44.0
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 2.3e-52 210.7 430 36.3
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 2.3e-52 210.7 430 36.3
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 5.1e-52 209.5 393 40.2
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 1.5e-51 208.0 371 39.9
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 2.7e-45 187.2 301 42.9
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-44 184.9 296 43.9
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 1.8e-44 184.5 340 41.2
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 5.1e-44 183.0 206 53.4
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 3.3e-43 180.3 256 47.7
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 4.4e-43 179.9 335 40.6
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 6.3e-42 176.0 317 40.4
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 5.3e-41 172.9 262 45.0
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.7e-40 169.1 267 41.9
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 6.5e-39 166.0 249 46.2
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.2e-38 163.7 155 59.4
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.2e-37 161.8 234 47.9
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.3e-36 157.5 221 48.0
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 1.8e-33 147.9 144 59.0
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 3.1e-33 147.1 192 47.9
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.6e-32 144.1 151 54.3
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 1.4e-28 131.7 467 30.0
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 2.6e-27 127.5 150 50.0
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.7e-27 126.3 206 43.7
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 5.7e-27 126.3 199 46.7
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.3e-26 125.2 149 55.7
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.2e-23 114.4 101 63.4
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 2.2e-18 97.8 88 58.0
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.5e-11 75.1 92 44.6
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.0e-11 74.7 102 43.1
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 5.7e-11 73.2 92 46.7
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 2.4e-09 67.8 121 33.9
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 2.7e-08 64.3 103 35.0
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.7e-08 64.3 89 44.9
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 4.6e-08 63.5 161 31.7


User provided reference genes

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