Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 6.0e-97 357.5 175 100.0
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 5.3e-93 344.4 190 90.5
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.3e-91 339.7 175 94.3
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 2.2e-91 339.0 175 94.3
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 2.9e-91 338.6 175 93.7
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 5.5e-90 334.3 174 92.0
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 1.0e-88 330.1 175 90.3
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 3.0e-88 328.6 175 89.1
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 3.9e-88 328.2 175 89.7
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 8.7e-88 327.0 174 89.1
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 2.5e-87 325.5 175 88.6
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 88.6
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 88.0
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 5.7e-87 324.3 175 88.6
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 7.4e-87 323.9 175 88.6
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 9.7e-87 323.6 175 88.0
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 9.7e-87 323.6 175 88.6
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.3e-86 323.2 175 87.4
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 1.3e-86 323.2 173 88.4
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 1.3e-86 323.2 175 86.9
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 1.3e-86 323.2 174 88.5
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 1.6e-86 322.8 175 88.0
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.6e-86 322.8 175 88.0
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 2.2e-86 322.4 175 90.3
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 2.2e-86 322.4 175 88.0
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 2.2e-86 322.4 175 88.0
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 3.7e-86 321.6 172 88.4
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 3.7e-86 321.6 175 87.4
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 6.3e-86 320.9 175 87.4
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 6.3e-86 320.9 172 88.4
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 6.3e-86 320.9 172 87.8
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 8.2e-86 320.5 175 86.3
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 8.2e-86 320.5 172 89.0
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 1.1e-85 320.1 175 87.4
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 1.1e-85 320.1 174 87.4
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.4e-85 319.7 175 86.9
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.4e-85 319.7 175 88.0
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 1.8e-85 319.3 172 88.4
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 2.4e-85 318.9 173 87.3
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 2.4e-85 318.9 172 87.8
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 3.1e-85 318.5 175 85.7
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 5.3e-85 317.8 175 86.3
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 6.9e-85 317.4 173 86.7
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 6.9e-85 317.4 175 86.9
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 9.0e-85 317.0 174 87.4
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.0e-85 317.0 174 87.4
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 1.2e-84 316.6 172 86.6
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 1.2e-84 316.6 173 86.7
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.2e-84 316.6 173 86.7
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 1.2e-84 316.6 172 87.2
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.5e-84 316.2 173 86.7
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 1.5e-84 316.2 174 85.6
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.5e-84 316.2 174 86.2
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 1.5e-84 316.2 172 88.4
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 1.5e-84 316.2 174 86.2
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 2.0e-84 315.8 172 86.6
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 2.0e-84 315.8 172 87.2
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 2.6e-84 315.5 174 86.8
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 2.6e-84 315.5 172 86.6
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 3.4e-84 315.1 173 86.1
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 3.4e-84 315.1 175 84.6
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 4.5e-84 314.7 175 85.7
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 4.5e-84 314.7 172 86.6
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 4.5e-84 314.7 175 85.1
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.9e-84 314.3 174 86.8
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 1.3e-83 313.2 172 86.0
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 1.3e-83 313.2 172 86.0
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 2.2e-83 312.4 173 85.5
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 2.2e-83 312.4 173 85.5
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 2.2e-83 312.4 173 84.4
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 2.9e-83 312.0 174 84.5
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 3.8e-83 311.6 171 86.0
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 6.5e-83 310.8 174 85.6
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 6.5e-83 310.8 175 85.1
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 6.5e-83 310.8 171 84.8
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 8.5e-83 310.5 172 85.5
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 8.5e-83 310.5 172 85.5
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 1.1e-82 310.1 175 85.1
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 1.9e-82 309.3 175 83.4
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 1.9e-82 309.3 172 84.9
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 1.9e-82 309.3 172 84.3
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.5e-82 308.9 172 85.5
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 4.2e-82 308.1 174 85.1
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 3.6e-81 305.1 172 83.1
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 1.8e-80 302.8 226 68.6
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 3.9e-80 301.6 181 81.2
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 5.1e-80 301.2 172 82.6
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 2.0e-79 299.3 173 82.1
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 2.0e-79 299.3 172 82.6
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 2.0e-79 299.3 172 82.6
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 2.0e-79 299.3 172 82.6
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 2.0e-79 299.3 172 82.6
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 2.8e-78 295.4 172 82.0
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 6.3e-78 294.3 159 88.7
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.4e-77 293.1 173 79.8
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.1e-77 292.0 173 79.2
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 4.5e-76 288.1 175 78.9
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.0e-75 287.0 167 80.8
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.9e-74 282.7 158 87.3
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 3.7e-70 268.5 151 85.4
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 3.1e-69 265.4 149 86.6
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 2.9e-67 258.8 146 84.9
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.9e-67 258.8 174 66.1
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 5.0e-67 258.1 174 66.7
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 5.0e-67 258.1 174 67.8
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 8.5e-67 257.3 176 68.8
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 6.7e-64 247.7 127 94.5
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 6.7e-64 247.7 138 87.0
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 8.2e-62 240.7 182 68.7
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 9.1e-61 237.3 126 91.3
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 1.2e-60 236.9 185 65.9
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 3.5e-60 235.3 134 85.8
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 4.5e-60 235.0 130 85.4
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 4.5e-60 235.0 130 85.4
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 2.9e-59 232.3 172 69.2
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 5.0e-59 231.5 127 85.0
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 4.2e-58 228.4 128 84.4
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 5.5e-58 228.0 133 83.5
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 1.2e-57 226.9 130 83.8
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 2.1e-57 226.1 176 63.1
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 5.2e-56 221.5 127 82.7
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 2.8e-54 215.7 129 79.8
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.1e-53 213.8 163 69.3
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 6.5e-51 204.5 132 75.0
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 2.5e-50 202.6 128 78.9
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 7.2e-50 201.1 147 72.8
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 4.4e-47 191.8 130 71.5
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 3.6e-41 172.2 131 68.7
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.0e-37 157.9 92 83.7
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 2.0e-36 156.4 96 80.2
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.9e-35 152.1 89 85.4
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 3.9e-35 152.1 93 77.4
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 3.3e-34 149.1 80 85.0
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.8e-33 146.0 92 79.3
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.7e-33 145.2 95 77.9
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.2e-33 144.8 127 64.6
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.3e-32 142.9 103 69.9
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.8e-32 141.4 90 77.8
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 6.8e-32 141.4 88 76.1
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 2.7e-28 129.4 75 84.0
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 6.0e-28 128.3 99 64.6
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.0e-27 127.5 80 77.5
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 1.1e-26 124.0 195 35.9
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 1.6e-25 120.2 109 55.0
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.1e-25 119.8 77 77.9
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.4e-21 107.1 90 62.2
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 7.1e-21 104.8 57 86.0
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 9.2e-13 77.8 37 86.5


User provided reference genes

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