Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002262g0100 Nicotiana tabacum HOM05D008545 ORTHO05D010341 6.8e-122 440.7 220 100.0
Nitab4.5_0003779g0040 Nicotiana tabacum HOM05D008545 ORTHO05D010341 2.2e-80 302.8 218 72.0
Peaxi162Scf00403g00718 Petunia axillaris HOM05D008545 ORTHO05D010341 6.3e-75 284.6 219 67.1
CAN.G310.5 Capsicum annuum HOM05D008545 ORTHO05D010341 4.3e-68 261.9 222 60.4
PGSC0003DMG400033878 Solanum tuberosum HOM05D008545 ORTHO05D010341 9.7e-68 260.8 223 58.3
Solyc05g050240.3 Solanum lycopersicum HOM05D008545 ORTHO05D010341 4.4e-60 235.3 224 53.6
Sopen05g028690 Solanum pennellii HOM05D008545 ORTHO05D010341 8.8e-45 184.5 171 55.6
Lj9A592T71 Lonicera japonica HOM05D008545 ORTHO05D010341 1.0e-37 161.0 201 45.3
Lj7A504G55 Lonicera japonica HOM05D008545 ORTHO05D010341 5.7e-36 155.2 192 46.9
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 4.5e-33 145.6 201 38.3
GSVIVG01027047001 Vitis vinifera HOM05D008545 ORTHO05D010341 5.9e-33 145.2 193 40.9
Dinv43892 Davidia involucrata HOM05D008545 ORTHO05D010341 1.7e-32 143.7 168 48.8
Thecc.01G347700 Theobroma cacao HOM05D008545 ORTHO05D010341 8.5e-32 141.4 195 41.5
Gohir.A07G139700 Gossypium hirsutum HOM05D008545 ORTHO05D010341 4.2e-31 139.0 201 40.3
Gohir.D07G144800 Gossypium hirsutum HOM05D008545 ORTHO05D010341 9.5e-31 137.9 201 39.8
Gorai.001G156800 Gossypium raimondii HOM05D008545 ORTHO05D010341 9.5e-31 137.9 201 39.8
Atru.chr5.619 Acer truncatum HOM05D008545 ORTHO05D010341 1.6e-30 137.1 196 38.3
Duzib138G0500 Durio zibethinus HOM05D008545 ORTHO05D010341 1.6e-30 137.1 198 40.4
PGR031G2054 Punica granatum HOM05D008545 ORTHO05D010341 1.6e-30 137.1 223 40.4
Potri.002G167500 Populus trichocarpa HOM05D008545 ORTHO05D010341 2.8e-30 136.3 187 43.9
Potri.014G094600 Populus trichocarpa HOM05D008545 ORTHO05D010341 8.8e-29 131.3 200 40.0
CSS0024380 Camellia sinensis var. sinensis HOM05D008545 ORTHO05D010341 6.3e-27 125.2 219 38.8
Manes.01G249300 Manihot esculenta HOM05D008545 ORTHO05D010341 6.3e-27 125.2 201 40.3
MSTRG.17319 Avicennia marina HOM05D008545 ORTHO05D010341 1.2e-25 120.9 214 33.6
Eucgr.D02345 Eucalyptus grandis HOM05D008545 ORTHO05D010341 1.7e-24 117.1 201 37.3
DCAR_016077 Daucus carota HOM05D009167 ORTHO05D010341 9.5e-23 111.3 201 36.8
Actinidia20194 Actinidia chinensis HOM05D008545 ORTHO05D010341 1.8e-21 107.1 163 41.1
Sabra14G0069200 Salix brachista HOM05D008545 ORTHO05D010341 1.2e-20 104.4 151 39.7
SGA_v2.0_scaffold5G02985 Striga asiatica HOM05D008545 ORTHO05D010341 1.2e-20 104.4 215 33.5
CANSAT56G3993 Cannabis sativa HOM05D008545 ORTHO05D010341 1.2e-17 94.4 209 34.4
MD07G1144400 Malus domestica HOM05D008545 ORTHO05D010341 1.6e-17 94.0 179 35.2
Hma1.2p1_0384F.1_g141050 Hydrangea macrophylla HOM05D008545 ORTHO05D010341 7.8e-17 91.7 105 41.9
FAN06G5050 Fragaria x ananassa HOM05D008545 ORTHO05D010341 1.9e-15 87.0 159 38.4
RcHm_v2.0_Chr1g0358691 Rosa chinensis HOM05D008545 ORTHO05D010341 3.3e-15 86.3 157 35.7
FvH4_7g15870 Fragaria vesca HOM05D008545 ORTHO05D010341 5.6e-15 85.5 159 38.4
Prupe.2G183300 Prunus persica HOM05D008545 ORTHO05D010341 2.1e-14 83.6 166 34.9
FAN01G1302 Fragaria x ananassa HOM05D008545 ORTHO05D010341 4.7e-14 82.4 159 37.7
FAN10G0919 Fragaria x ananassa HOM05D008545 ORTHO05D010341 4.0e-13 79.3 159 36.5
FAN10G3148 Fragaria x ananassa HOM05D008545 ORTHO05D010341 4.0e-13 79.3 159 37.1
FAN03G1297 Fragaria x ananassa HOM05D008545 ORTHO05D010341 8.9e-13 78.2 158 36.7
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 5.8e-12 75.5 215 29.8
COL.COLO4_06334 Corchorus olitorius HOM05D002314 ORTHO05D002538 7.5e-12 75.1 73 52.1
Migut.B01833 Erythranthe guttata HOM05D008545 ORTHO05D010341 8.3e-11 71.6 107 37.4
SalBow3G1564 Salvia bowleyana HOM05D008545 ORTHO05D010341 1.1e-10 71.2 104 42.3
MD01G1075500 Malus domestica HOM05D008545 ORTHO05D010341 1.2e-09 67.8 101 36.6
DCAR_008649 Daucus carota HOM05D008545 ORTHO05D010341 3.5e-09 66.2 221 28.5
CANSAT56G3625 Cannabis sativa HOM05D008545 ORTHO05D010341 1.7e-08 63.9 70 44.3
SGA_v2.0_scaffold548G52844 Striga asiatica HOM05D046447 ORTHO05D010341 5.0e-08 62.4 113 34.5
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 1.5e-07 60.8 167 26.9
DCAR_016072 Daucus carota HOM05D008545 ORTHO05D010341 4.3e-07 59.3 122 32.8
Actinidia10102 Actinidia chinensis HOM05D008545 ORTHO05D010341 1.6e-06 57.4 120 34.2
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 3.6e-06 56.2 167 25.1
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 4.7e-06 55.8 189 25.4
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 4.7e-06 55.8 109 33.9
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 6.2e-06 55.5 166 25.9
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 6.2e-06 55.5 167 26.3
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 8.1e-06 55.1 199 24.1
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 8.1e-06 55.1 125 28.0


User provided reference genes

Program Settings