Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.1e-218 761.1 398 100.0
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 6.9e-181 637.5 363 93.1
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 6.1e-137 491.5 513 56.3
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 6.7e-136 488.0 520 56.3
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.0e-131 474.2 511 54.8
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.5e-130 470.3 511 54.6
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.1e-117 426.0 506 51.2
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 2.0e-116 423.3 513 50.7
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.0e-111 406.8 526 49.4
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 6.1e-105 385.2 527 48.2
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.2e-102 376.7 501 49.7
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 9.2e-93 344.7 521 45.7
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 2.2e-86 323.6 507 44.2
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 3.3e-82 309.7 528 40.9
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 6.2e-81 305.4 516 40.1
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.5e-79 300.8 503 41.7
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 3.4e-79 299.7 525 39.6
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 9.9e-79 298.1 505 40.4
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 1.7e-78 297.4 520 40.0
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 9.3e-77 291.6 495 44.4
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.4e-72 277.7 470 41.7
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 9.0e-72 275.0 527 36.6
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.4e-71 272.7 454 44.5
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 3.8e-70 269.6 487 39.6
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 2.1e-68 263.8 478 40.0
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 2.7e-68 263.5 506 39.1
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 6.0e-68 262.3 511 40.3
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 3.9e-67 259.6 495 41.8
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 6.6e-67 258.8 511 39.9
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 5.6e-66 255.8 508 39.2
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 7.3e-66 255.4 505 38.0
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 1.3e-65 254.6 504 36.9
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 6.2e-65 252.3 516 40.3
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 2.4e-64 250.4 503 36.2
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 6.9e-64 248.8 498 40.8
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 2.0e-63 247.3 330 48.5
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 2.6e-63 246.9 495 39.6
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 4.5e-63 246.1 510 37.1
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 4.5e-63 246.1 289 50.2
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 7.6e-63 245.4 487 35.9
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 9.9e-63 245.0 489 39.3
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 5.5e-61 239.2 549 33.2
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.2e-60 238.0 508 37.0
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 3.5e-60 236.5 456 36.6
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.3e-59 234.6 468 37.4
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.1e-58 231.5 472 37.5
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 1.5e-58 231.1 454 36.1
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 3.3e-58 229.9 505 36.4
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.6e-57 227.6 492 37.0
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 2.1e-57 227.3 484 37.0
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 2.8e-57 226.9 484 37.6
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 6.2e-57 225.7 295 46.4
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.1e-56 224.9 632 32.4
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.1e-56 224.9 460 35.9
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 1.4e-56 224.6 431 39.0
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 2.4e-56 223.8 484 37.2
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.3e-56 222.6 454 40.3
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 9.0e-56 221.9 300 47.7
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 1.5e-55 221.1 515 35.1
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 2.6e-55 220.3 510 35.3
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 5.8e-55 219.2 468 37.4
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.7e-54 217.6 509 34.2
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 4.9e-54 216.1 534 33.5
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 8.4e-54 215.3 512 35.9
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.4e-53 214.5 295 45.1
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 1.9e-53 214.2 441 38.1
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.9e-53 214.2 443 38.8
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 3.2e-53 213.4 532 33.5
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 7.1e-53 212.2 522 35.6
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 1.6e-52 211.1 276 46.0
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 2.1e-52 210.7 528 33.3
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 6.0e-52 209.1 198 57.6
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 7.9e-52 208.8 497 32.8
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 2.3e-51 207.2 518 33.6
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.6e-49 201.1 506 33.6
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 2.1e-49 200.7 444 35.1
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 3.7e-49 199.9 489 35.0
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 5.3e-48 196.1 440 36.1
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 5.3e-48 196.1 463 35.2
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 1.3e-46 191.4 445 33.5
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 2.2e-46 190.7 449 33.4
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 2.2e-46 190.7 452 33.6
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 3.8e-46 189.9 446 32.7
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 1.9e-45 187.6 338 39.1
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.2e-45 186.8 463 32.4
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 1.2e-44 184.9 291 40.9
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 2.7e-44 183.7 192 52.6
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 6.1e-44 182.6 291 40.5
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 7.9e-44 182.2 291 40.5
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 7.9e-44 182.2 291 40.5
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 7.9e-44 182.2 327 39.4
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.9e-44 182.2 327 39.4
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.9e-44 182.2 327 39.4
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 1.0e-43 181.8 295 41.0
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 1.0e-43 181.8 447 33.3
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 1.0e-43 181.8 437 33.9
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.8e-43 181.0 445 32.8
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 1.8e-43 181.0 420 35.2
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.9e-43 179.9 327 39.1
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 3.3e-42 176.8 293 40.3
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 3.3e-42 176.8 293 40.3
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 3.3e-42 176.8 293 40.3
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 1.3e-41 174.9 259 42.9
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.8e-41 173.7 497 34.4
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 6.3e-41 172.6 561 29.8
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 6.3e-41 172.6 502 35.1
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 4.1e-40 169.9 444 33.1
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.3e-38 164.9 294 36.7
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 3.0e-35 153.7 156 51.9
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 4.3e-34 149.8 191 46.1
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 2.2e-33 147.5 259 39.0
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.2e-33 147.5 259 39.0
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-32 145.2 257 38.5
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 4.1e-32 143.3 434 31.3
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 4.1e-32 143.3 374 34.2
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 1.5e-31 141.4 370 31.1
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 4.5e-31 139.8 262 42.0
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.5e-31 139.8 257 38.5
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.0e-30 138.7 290 40.7
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.9e-30 137.1 117 59.0
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.9e-29 134.4 290 34.1
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.4e-29 132.1 327 33.3
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 7.9e-28 129.0 286 34.6
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 3.9e-27 126.7 496 29.2
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.5e-26 124.8 375 31.5
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 1.1e-24 118.6 125 48.8
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 5.3e-24 116.3 101 61.4
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.1e-21 108.6 328 30.8
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 6.7e-19 99.4 312 32.7
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 1.8e-16 91.3 332 26.5
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.0e-14 85.5 457 24.1
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.7e-14 84.7 119 42.0
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.6e-12 78.2 228 31.1
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 1.4e-11 75.1 232 28.9
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 8.8e-11 72.4 124 39.5
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 2.0e-10 71.2 161 31.7
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 2.0e-10 71.2 64 54.7
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 7.5e-10 69.3 287 24.7


User provided reference genes

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