Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 3.0e-182 641.7 330 100.0
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.1e-167 592.4 330 92.4
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 6.3e-156 554.3 330 86.1
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.8e-155 552.7 329 86.0
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 2.0e-154 549.3 330 85.2
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.0e-153 547.0 325 86.2
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 2.3e-150 535.8 336 82.7
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 6.4e-116 421.4 331 66.2
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 9.6e-112 407.5 333 63.1
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.4e-110 402.9 331 63.4
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 5.3e-110 401.7 333 64.6
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.5e-109 400.2 331 64.4
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 5.8e-109 398.3 329 61.7
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 8.4e-108 394.4 332 61.7
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 8.4e-108 394.4 327 63.6
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 1.4e-107 393.7 316 63.0
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 5.4e-107 391.7 313 62.9
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 7.1e-107 391.3 324 64.2
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 4.6e-106 388.7 330 60.3
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 6.0e-106 388.3 330 61.8
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.8e-105 386.7 301 64.8
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 1.8e-105 386.7 327 61.2
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.8e-105 386.7 256 73.4
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 3.9e-105 385.6 325 62.2
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 6.7e-105 384.8 329 62.6
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.9e-104 383.3 303 64.7
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.3e-103 380.6 333 60.4
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 6.2e-103 378.3 295 67.1
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 6.2e-103 378.3 330 61.5
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.0e-102 375.6 297 66.3
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 5.3e-102 375.2 334 59.9
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.0e-102 374.4 297 66.7
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.2e-101 374.0 297 66.7
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.2e-101 374.0 325 61.5
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.5e-101 373.6 323 61.6
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.5e-101 372.1 329 59.9
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 5.8e-101 371.7 334 59.3
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.2e-100 369.8 328 58.5
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 2.9e-100 369.4 328 58.2
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.8e-100 369.0 333 60.4
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 8.4e-100 367.9 320 60.6
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 2.5e-99 366.3 330 61.8
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 7.1e-99 364.8 332 59.6
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 9.3e-99 364.4 303 61.1
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 1.2e-98 364.0 290 63.8
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 2.7e-98 362.8 334 58.4
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.7e-98 362.8 334 58.4
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 2.7e-98 362.8 311 61.4
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 3.5e-98 362.5 337 58.8
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 6.0e-98 361.7 305 61.0
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 6.0e-98 361.7 254 71.3
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 6.0e-98 361.7 303 61.1
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 7.9e-98 361.3 323 57.9
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 1.0e-97 360.9 301 60.1
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 1.0e-97 360.9 301 60.1
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 3.9e-97 359.0 281 64.1
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 5.1e-97 358.6 300 63.0
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 5.1e-97 358.6 330 59.4
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 5.1e-97 358.6 310 60.0
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 6.7e-97 358.2 303 60.1
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 6.7e-97 358.2 303 59.7
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 6.7e-97 358.2 305 60.0
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 6.7e-97 358.2 326 58.3
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 1.5e-96 357.1 301 59.5
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 3.3e-96 355.9 301 59.5
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 5.7e-96 355.1 301 59.5
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 2.8e-95 352.8 325 57.2
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 1.1e-94 350.9 325 56.0
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.0e-94 349.0 299 61.2
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.3e-94 348.6 321 58.6
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 6.9e-94 348.2 335 55.2
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 6.9e-94 348.2 332 56.0
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 9.0e-94 347.8 332 57.8
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.5e-93 347.1 327 56.3
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.5e-93 347.1 321 57.9
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 3.4e-93 345.9 326 58.0
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 3.4e-93 345.9 306 58.5
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 5.8e-93 345.1 327 58.4
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 7.6e-93 344.7 329 57.4
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.3e-92 344.0 328 55.5
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 3.8e-92 342.4 297 62.0
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 3.8e-92 342.4 297 62.0
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 3.8e-92 342.4 262 66.8
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 9.3e-91 337.8 328 55.5
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 9.3e-91 337.8 328 54.0
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 9.3e-91 337.8 329 52.9
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 1.3e-89 334.0 327 52.9
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 6.7e-89 331.6 324 53.4
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 1.1e-88 330.9 328 54.9
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 5.7e-88 328.6 315 53.3
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.3e-87 327.4 322 53.1
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 3.7e-87 325.9 297 57.9
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.1e-86 324.3 328 53.4
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 2.4e-86 323.2 326 51.2
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 3.1e-86 322.8 328 53.4
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 3.1e-86 322.8 280 62.5
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 5.3e-86 322.0 331 51.7
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 5.3e-86 322.0 327 51.7
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.5e-85 320.5 332 51.5
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.0e-85 320.1 323 51.7
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 3.4e-85 319.3 315 51.7
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 4.5e-85 318.9 277 59.9
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.5e-85 318.9 323 51.7
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.9e-85 318.5 323 51.4
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 7.7e-85 318.2 323 51.4
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.9e-84 316.2 311 51.1
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.5e-84 315.1 312 51.9
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 7.9e-82 308.1 328 49.7
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.0e-81 307.8 328 49.4
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 1.4e-81 307.4 329 49.2
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.4e-81 307.4 257 60.3
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.8e-81 307.0 258 58.5
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.3e-81 306.6 346 48.6
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.0e-81 306.2 328 49.7
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 8.8e-81 304.7 328 49.4
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.1e-80 304.3 331 50.2
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 1.5e-80 303.9 300 54.3
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.5e-80 303.9 285 55.8
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.3e-80 302.8 322 49.7
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 7.4e-80 301.6 302 50.0
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 9.7e-80 301.2 304 51.3
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 1.3e-79 300.8 350 47.7
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.7e-79 300.4 311 51.4
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 2.8e-79 299.7 320 50.3
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 3.7e-79 299.3 331 51.7
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 8.2e-79 298.1 346 49.4
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.8e-78 297.0 305 51.5
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 2.4e-78 296.6 329 51.1
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 5.3e-78 295.4 335 48.1
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 5.3e-78 295.4 257 58.8
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.0e-77 293.5 325 48.9
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 2.6e-77 293.1 325 48.3
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 3.4e-77 292.7 323 48.6
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 7.7e-77 291.6 333 46.5
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 1.0e-76 291.2 267 59.6
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 1.3e-76 290.8 286 50.3
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 5.0e-76 288.9 270 52.6
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 5.5e-75 285.4 305 50.2
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 5.5e-75 285.4 327 44.6
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 9.4e-75 284.6 255 54.1
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 9.4e-75 284.6 327 45.9
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 9.4e-75 284.6 294 52.0
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 9.4e-75 284.6 324 47.2
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 2.7e-74 283.1 311 49.2
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 7.9e-74 281.6 324 48.8
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.4e-73 280.8 324 46.6
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 3.0e-73 279.6 308 50.3
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.3e-71 274.2 328 44.8
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 8.5e-68 261.5 248 51.6
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 3.6e-66 256.1 288 44.8
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 4.7e-66 255.8 157 77.7
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 1.1e-64 251.1 264 52.7
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 3.2e-59 233.0 159 67.9
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 7.2e-59 231.9 237 51.9
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 6.8e-57 225.3 181 58.0
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 2.0e-56 223.8 154 71.4
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 9.8e-56 221.5 214 52.8
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.5e-53 212.6 149 72.5
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 1.7e-52 210.7 242 50.0
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 6.8e-49 198.7 231 48.9
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 6.8e-49 198.7 236 45.8
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 3.4e-48 196.4 285 44.2
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 4.5e-45 186.0 210 48.6
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.1e-43 181.4 225 45.3
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 1.2e-37 161.4 258 37.2
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 6.6e-36 155.6 234 39.7
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 8.6e-36 155.2 107 74.8
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 9.8e-32 141.7 89 75.3
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 2.0e-29 134.0 83 85.5
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 2.3e-25 120.6 91 64.8
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.4e-24 116.7 76 72.4
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.9e-22 110.9 84 65.5
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 2.7e-21 107.1 77 63.6
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.0e-20 105.1 123 39.0
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.6e-10 71.2 56 64.3
Ciclev10027336m.g Citrus clementina HOM05D003303 ORTHO05D003887 3.4e-08 63.5 101 43.6


User provided reference genes

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