Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002249g0090 Nicotiana tabacum HOM05D006288 ORTHO05D007416 6.5e-35 150.2 78 100.0
PGSC0003DMG400026550 Solanum tuberosum HOM05D006288 ORTHO05D007416 4.7e-33 144.1 76 97.4
Peaxi162Scf00019g00316 Petunia axillaris HOM05D006288 ORTHO05D007416 8.0e-33 143.3 78 94.9
Nitab4.5_0003203g0060 Nicotiana tabacum HOM05D006288 ORTHO05D007416 1.8e-32 142.1 78 96.2
Solyc02g065690.3 Solanum lycopersicum HOM05D006288 ORTHO05D007416 1.8e-32 142.1 76 96.1
Sopen02g015910 Solanum pennellii HOM05D006288 ORTHO05D007416 1.8e-32 142.1 76 96.1
vmacro18118 Vaccinium macrocarpon HOM05D006288 ORTHO05D007416 1.8e-32 142.1 78 92.3
Rhsim10G0068900 Rhododendron simsii HOM05D006288 ORTHO05D007416 8.8e-32 139.8 78 91.0
CSS0015874 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.5e-31 139.0 78 89.7
CSS0028097 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.5e-31 139.0 78 89.7
Dinv34894 Davidia involucrata HOM05D006288 ORTHO05D007416 3.4e-31 137.9 77 90.9
Oeu007090.1 Olea europaea HOM05D006288 ORTHO05D007416 4.4e-31 137.5 78 89.7
GSVIVG01036516001 Vitis vinifera HOM05D006288 ORTHO05D007416 5.7e-31 137.1 78 88.5
Rhsim08G0078400 Rhododendron simsii HOM05D006288 ORTHO05D007416 7.5e-31 136.7 78 89.7
Cc07_g04640 Coffea canephora HOM05D006288 ORTHO05D007416 1.3e-30 136.0 76 89.5
Manes.01G106000 Manihot esculenta HOM05D006288 ORTHO05D007416 1.7e-30 135.6 78 88.5
Hma1.2p1_0304F.1_g119265 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 2.2e-30 135.2 78 88.5
Hma1.2p1_0304F.1_g119270 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 2.2e-30 135.2 78 88.5
Thecc.10G108100 Theobroma cacao HOM05D005170 ORTHO05D007416 2.2e-30 135.2 76 88.2
Duzib133G0644 Durio zibethinus HOM05D006288 ORTHO05D007416 8.3e-30 133.3 76 86.8
Duzib133G1254 Durio zibethinus HOM05D006288 ORTHO05D007416 8.3e-30 133.3 76 86.8
Gohir.D12G056100 Gossypium hirsutum HOM05D006288 ORTHO05D007416 8.3e-30 133.3 76 86.8
Gorai.008G059200 Gossypium raimondii HOM05D006288 ORTHO05D007416 8.3e-30 133.3 76 86.8
TWI60G1717 Tripterygium wilfordii HOM05D006288 ORTHO05D007416 8.3e-30 133.3 78 88.5
Hma1.2p1_2186F.1_g316383 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 1.4e-29 132.5 78 85.9
Hma1.2p1_3488F.1_g336360 Hydrangea macrophylla HOM05D006288 ORTHO05D007416 1.4e-29 132.5 78 85.9
Cfa007713 Carpinus fangiana HOM05D006288 ORTHO05D007416 2.4e-29 131.7 77 85.7
Migut.K00879 Erythranthe guttata HOM05D006288 ORTHO05D007416 2.4e-29 131.7 78 85.9
CSS0029131 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 3.1e-29 131.3 78 85.9
TAR629G2245 Trochodendron aralioides HOM05D006288 ORTHO05D007416 3.1e-29 131.3 76 86.8
Gohir.A12G056700 Gossypium hirsutum HOM05D006288 ORTHO05D007416 4.1e-29 131.0 76 85.5
PGR004G0851 Punica granatum HOM05D006288 ORTHO05D007416 1.2e-28 129.4 78 83.3
Hund16253 Selenicereus undatus HOM05D006288 ORTHO05D007416 1.2e-28 129.4 78 82.1
Ah.16g100880 Amaranthus hybridus HOM05D006288 ORTHO05D007416 2.0e-28 128.6 78 82.1
SGA_v2.0_scaffold30G12393 Striga asiatica HOM05D006288 ORTHO05D007416 2.7e-28 128.3 78 80.8
Atru.chr8.595 Acer truncatum HOM05D006288 ORTHO05D007416 3.5e-28 127.9 78 82.1
COL.COLO4_00228 Corchorus olitorius HOM05D006288 ORTHO05D007416 5.9e-28 127.1 76 84.2
DCAR_011002 Daucus carota HOM05D006288 ORTHO05D007416 7.7e-28 126.7 76 82.9
CiPaw.03G081300 Carya illinoinensis HOM05D006288 ORTHO05D007416 1.0e-27 126.3 77 83.1
MD09G1077100 Malus domestica HOM05D006288 ORTHO05D007416 1.0e-27 126.3 76 81.6
Prupe.3G247000 Prunus persica HOM05D006288 ORTHO05D007416 1.0e-27 126.3 75 84.0
CSS0016762 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.3e-27 125.9 76 84.2
CSS0047986 Camellia sinensis var. sinensis HOM05D006288 ORTHO05D007416 1.3e-27 125.9 76 84.2
RcHm_v2.0_Chr2g0164421 Rosa chinensis HOM05D006288 ORTHO05D007416 1.7e-27 125.6 77 79.2
PSO832G2920 Papaver somniferum HOM05D006288 ORTHO05D007416 2.2e-27 125.2 78 79.5
PSO210G6985 Papaver somniferum HOM05D006288 ORTHO05D007416 2.9e-27 124.8 78 78.2
Psat5g210920 Pisum sativum HOM05D006288 ORTHO05D007416 3.8e-27 124.4 73 83.6
Sc11g0008960 Simmondsia chinensis HOM05D006288 ORTHO05D007416 3.8e-27 124.4 75 81.3
Glyma.13G051400 Glycine max HOM05D006288 ORTHO05D007416 5.0e-27 124.0 73 82.2
Glyma.19G037000 Glycine max HOM05D006288 ORTHO05D007416 5.0e-27 124.0 73 83.6
MD17G1067500 Malus domestica HOM05D006288 ORTHO05D007416 5.0e-27 124.0 75 80.0
TPR.G14566 Trifolium pratense HOM05D006288 ORTHO05D007416 5.0e-27 124.0 73 83.6
SalBow7G0779 Salvia bowleyana HOM05D006288 ORTHO05D007416 8.5e-27 123.2 77 79.2
Cpa.g.sc14.255 Carica papaya HOM05D006288 ORTHO05D007416 1.1e-26 122.9 78 80.8
Psat5g210840 Pisum sativum HOM05D006288 ORTHO05D007416 1.1e-26 122.9 73 82.2
Medtr3g034300 Medicago truncatula HOM05D006288 ORTHO05D007416 1.5e-26 122.5 73 82.2
PSO675G0562 Papaver somniferum HOM05D006288 ORTHO05D007416 1.5e-26 122.5 78 79.5
Lj3g0015520 Lotus japonicus HOM05D006288 ORTHO05D007416 1.9e-26 122.1 73 82.2
Lalb_Chr21g0318141 Lupinus albus HOM05D006288 ORTHO05D007416 2.5e-26 121.7 73 80.8
Phvul.004G044700 Phaseolus vulgaris HOM05D006288 ORTHO05D007416 2.5e-26 121.7 72 81.9
QL09p029462 Quercus lobata HOM05D006288 ORTHO05D007416 2.5e-26 121.7 76 80.3
Ca_13697_v3 Cicer arietinum L. HOM05D006288 ORTHO05D007416 3.2e-26 121.3 72 83.3
Manes.02G062500 Manihot esculenta HOM05D006288 ORTHO05D007416 3.2e-26 121.3 72 87.5
VMungo0464G1523 Vigna mungo HOM05D006288 ORTHO05D007416 4.2e-26 120.9 72 81.9
arahy.Tifrunner.gnm1.ann1.J0I6JM Arachis hypogaea HOM05D006288 ORTHO05D007416 1.6e-25 119.0 73 79.5
CsaV3_4G009920 Cucumis sativus L. HOM05D006288 ORTHO05D007416 1.6e-25 119.0 76 78.9
PSO541G1058 Papaver somniferum HOM05D006288 ORTHO05D007416 2.7e-25 118.2 78 76.9
ATR0691G027 Amborella trichopoda HOM05D006288 ORTHO05D007416 3.6e-25 117.9 77 74.0
Psat5g212400 Pisum sativum HOM05D006288 ORTHO05D007416 4.7e-25 117.5 77 75.3
Atru.BG.156.p Acer truncatum HOM05D006288 ORTHO05D007416 1.4e-24 115.9 72 77.8
CANSAT64G2264 Cannabis sativa HOM05D005170 ORTHO05D007416 2.3e-24 115.2 71 80.3
Lsat_1_v5_gn_4_174040 Lactuca sativa HOM05D006288 ORTHO05D007416 2.3e-24 115.2 77 75.3
Eucgr.F02878 Eucalyptus grandis HOM05D006288 ORTHO05D007416 3.0e-24 114.8 76 75.0
Os02g0190900 Oryza sativa ssp. japonica HOM05D006288 ORTHO05D007416 3.0e-24 114.8 77 74.0
CAN.G93.47 Capsicum annuum HOM05D006288 ORTHO05D007416 1.3e-22 109.4 76 76.3
THA.LOC104805112 Tarenaya hassleriana HOM05D006288 ORTHO05D007416 1.3e-22 109.4 73 72.6
EL10Ac2g04409 Beta vulgaris HOM05D006288 ORTHO05D007416 2.2e-22 108.6 78 71.8
unitig_32.g10759 Utricularia gibba HOM05D006288 ORTHO05D007416 2.2e-22 108.6 78 67.9
HPP92_018391 Vanilla planifolia HOM05D006288 ORTHO05D007416 3.7e-22 107.8 73 72.6
AUR62023135 Chenopodium quinoa HOM05D006288 ORTHO05D007416 8.3e-22 106.7 78 67.9
SEGI_23755 Sequoiadendron giganteum HOM05D006288 ORTHO05D007416 1.1e-21 106.3 72 70.8
FAN10G2886 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.8e-21 105.5 63 82.5
FAN10G3625 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.8e-21 105.5 63 82.5
Zm00001eb234970 Zea mays HOM05D006288 ORTHO05D007416 1.8e-21 105.5 74 66.2
Actinidia17612 Actinidia chinensis HOM05D006288 ORTHO05D007416 4.5e-20 100.9 65 83.1
BolC7t44529H Brassica oleracea HOM05D006288 ORTHO05D007416 2.9e-19 98.2 70 65.7
C07p39960 Brassica napus HOM05D006288 ORTHO05D007416 5.0e-19 97.4 70 65.7
BraA06t26742Z Brassica rapa HOM05D006288 ORTHO05D007416 1.1e-18 96.3 70 64.3
Sabra17G0089200 Salix brachista HOM05D006288 ORTHO05D007416 1.5e-18 95.9 59 79.7
FAN14G1171 Fragaria x ananassa HOM05D006288 ORTHO05D007416 9.5e-18 93.2 77 63.6
Actinidia26277 Actinidia chinensis HOM05D006288 ORTHO05D007416 3.6e-17 91.3 78 61.5
Nn4g23570 Nelumbo nucifera HOM05D006288 ORTHO05D007416 3.6e-17 91.3 77 63.6
CDE10G0042 Ceratophyllum demersum HOM05D006288 ORTHO05D007416 1.5e-15 85.9 53 73.6
HanXRQChr15g0464891 Helianthus annuus HOM05D006288 ORTHO05D007416 4.4e-15 84.3 77 57.1
Lsat_1_v5_gn_4_173980 Lactuca sativa HOM05D006288 ORTHO05D007416 2.2e-14 82.0 77 55.8
Carub.0008s0943 Capsella rubella HOM05D006288 ORTHO05D007416 8.3e-14 80.1 75 53.3
MELO3C018910.2 Cucumis melo HOM05D006288 ORTHO05D007416 1.4e-13 79.3 76 55.3
ClCG07G016140 Citrullus lanatus HOM05D006288 ORTHO05D007416 2.4e-13 78.6 76 55.3
TAR371G0310 Trochodendron aralioides HOM05D006288 ORTHO05D007416 2.4e-13 78.6 49 75.5
Potri.017G106200 Populus trichocarpa HOM05D006288 ORTHO05D007416 5.4e-13 77.4 73 54.8
ECA232G4388 Erigeron canadensis HOM05D006288 ORTHO05D007416 1.6e-12 75.9 77 51.9
FvH4_6g24710 Fragaria vesca HOM05D006288 ORTHO05D007416 1.6e-12 75.9 41 87.8
FAN14G4004 Fragaria x ananassa HOM05D006288 ORTHO05D007416 1.6e-12 75.9 41 87.8
Sed0021882 Sechium edule HOM05D006288 ORTHO05D007416 1.6e-12 75.9 78 55.1
Mapoly0015s0174 Marchantia polymorpha HOM05D006288 ORTHO05D007416 2.0e-12 75.5 71 49.3
AagrBONN_evm.TU.Sc2ySwM_344.2644 Anthoceros agrestis HOM05D006288 ORTHO05D007416 4.6e-12 74.3 72 47.2
Psat6g174640 Pisum sativum HOM05D006288 ORTHO05D007416 5.9e-12 73.9 62 61.3
Aa31LG7G12050 Aethionema arabicum HOM05D006288 ORTHO05D007416 7.8e-12 73.6 73 52.1
FAN03G1360 Fragaria x ananassa HOM05D006288 ORTHO05D007416 5.6e-10 67.4 55 60.0
FAN02G0987 Fragaria x ananassa HOM05D006288 ORTHO05D007416 7.3e-10 67.0 77 50.6
FAN05G5526 Fragaria x ananassa HOM05D006288 ORTHO05D007416 7.3e-10 67.0 77 50.6
FAN09G1057 Fragaria x ananassa HOM05D010582 ORTHO05D007416 7.3e-10 67.0 77 50.6
SMO358G0122 Selaginella moellendorffii HOM05D006288 ORTHO05D007416 2.3e-08 62.0 72 40.3
Haze_03283 Corylus avellana HOM05D002280 ORTHO05D002322 1.5e-07 59.3 33 84.8
CARHR287980 Cardamine hirsuta HOM05D006288 ORTHO05D007416 2.0e-07 58.9 73 43.8
AL8G23340 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 4.4e-07 57.8 75 40.0
Pp3c21_3840 Physcomitrium patens HOM05D006288 ORTHO05D007416 4.4e-07 57.8 71 43.7
Thhalv10005135m.g Eutrema salsugineum HOM05D006288 ORTHO05D007416 5.8e-07 57.4 39 66.7
FvH4_6g46100 Fragaria vesca HOM05D006288 ORTHO05D007416 9.8e-07 56.6 77 45.5
Sp2g19860 Schrenkiella parvula HOM05D006288 ORTHO05D007416 9.8e-07 56.6 73 41.1
AL954U10010 Arabidopsis lyrata HOM05D006288 ORTHO05D007416 1.3e-06 56.2 73 41.1
BcaB04g19620 Brassica carinata HOM05D006288 ORTHO05D007416 1.3e-06 56.2 39 66.7
A09p04890 Brassica napus HOM05D006288 ORTHO05D007416 1.3e-06 56.2 39 66.7
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 1.3e-06 56.2 39 66.7
AT5G49550 Arabidopsis thaliana HOM05D006288 ORTHO05D007416 1.7e-06 55.8 75 40.0
BcaC04g23731 Brassica carinata HOM05D006288 ORTHO05D007416 2.2e-06 55.5 37 67.6
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 2.2e-06 55.5 37 67.6
Eucgr.K01979 Eucalyptus grandis HOM05D006288 ORTHO05D007416 8.3e-06 53.5 54 59.3
SHI46878 Sapria himalayana HOM05D006288 ORTHO05D007416 8.3e-06 53.5 38 60.5


User provided reference genes

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