Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 5.7e-170 600.9 318 100.0
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 2.7e-164 582.0 318 96.2
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 8.0e-156 553.9 318 90.6
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 4.0e-155 551.6 317 90.9
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.5e-154 549.7 318 89.6
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 3.4e-154 548.5 318 91.8
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 5.5e-149 531.2 318 88.4
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 9.6e-109 397.5 326 66.9
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 1.1e-107 394.0 312 69.2
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 1.4e-107 393.7 268 74.6
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 1.8e-107 393.3 312 68.9
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 1.7e-105 386.7 268 73.5
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 2.2e-105 386.3 282 72.7
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 2.2e-105 386.3 274 72.3
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 8.4e-105 384.4 279 73.1
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 8.4e-105 384.4 268 75.4
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 1.4e-104 383.6 272 73.5
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 5.4e-104 381.7 268 75.4
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.2e-103 380.6 268 78.0
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 2.1e-103 379.8 268 78.0
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 2.1e-103 379.8 322 68.6
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 1.0e-102 377.5 272 73.9
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.0e-102 377.5 272 76.8
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.3e-102 377.1 312 67.0
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 2.3e-102 376.3 324 67.6
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 3.0e-102 375.9 272 72.4
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 3.9e-102 375.6 268 73.5
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 3.9e-102 375.6 272 72.8
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 5.1e-102 375.2 308 65.9
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 1.1e-101 374.0 283 70.7
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 1.1e-101 374.0 267 73.8
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 1.9e-101 373.2 316 65.2
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 2.5e-101 372.9 268 74.3
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 3.3e-101 372.5 272 72.4
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 4.3e-101 372.1 269 74.3
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 4.3e-101 372.1 275 70.5
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 7.3e-101 371.3 313 66.5
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 7.3e-101 371.3 272 72.8
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 7.3e-101 371.3 269 77.7
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.6e-100 370.2 318 69.2
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.1e-100 369.8 270 75.9
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 2.8e-100 369.4 268 72.0
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 2.8e-100 369.4 269 77.0
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 3.6e-100 369.0 267 75.3
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 4.8e-100 368.6 272 75.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 8.1e-100 367.9 267 75.7
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 8.1e-100 367.9 281 68.7
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 8.1e-100 367.9 268 72.8
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 1.1e-99 367.5 267 73.0
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 1.1e-99 367.5 268 73.9
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 1.1e-99 367.5 291 67.0
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 1.4e-99 367.1 265 73.6
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.8e-99 366.7 267 75.3
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 4.0e-99 365.5 263 73.4
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 9.0e-99 364.4 267 74.9
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.2e-98 364.0 303 68.3
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 1.2e-98 364.0 303 68.3
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 1.5e-98 363.6 285 68.4
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 2.0e-98 363.2 270 70.4
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.8e-98 361.7 268 74.3
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 7.6e-98 361.3 274 69.3
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 1.7e-97 360.1 282 72.3
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 2.2e-97 359.8 270 70.4
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 6.4e-97 358.2 287 71.1
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.1e-96 357.5 303 64.7
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 1.1e-96 357.5 293 70.0
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.4e-96 357.1 326 64.4
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 3.2e-96 355.9 266 69.9
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 7.1e-96 354.8 269 70.6
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.6e-95 353.6 319 62.1
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 1.6e-95 353.6 270 72.2
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 7.9e-95 351.3 325 64.0
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 2.3e-94 349.7 266 70.3
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 3.0e-94 349.4 268 70.5
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 1.1e-93 347.4 277 70.8
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 3.3e-93 345.9 257 70.4
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 3.3e-93 345.9 271 67.5
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 9.6e-93 344.4 243 73.7
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 1.3e-92 344.0 314 59.6
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 2.8e-92 342.8 268 71.3
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.8e-91 340.1 265 71.3
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.8e-91 340.1 269 69.1
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 1.2e-90 337.4 234 76.1
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 3.4e-90 335.9 269 65.4
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 4.5e-90 335.5 272 66.9
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 4.5e-90 335.5 272 66.9
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.7e-89 333.6 268 70.1
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 7.1e-88 328.2 276 64.1
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 9.3e-88 327.8 267 67.4
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 1.2e-87 327.4 278 67.3
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.6e-87 327.0 303 60.1
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 6.7e-86 321.6 269 65.1
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 1.1e-85 320.9 274 63.5
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 1.2e-82 310.8 249 62.2
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 2.6e-82 309.7 267 64.0
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 4.5e-82 308.9 247 66.4
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 2.9e-81 306.2 237 70.5
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 4.9e-81 305.4 271 62.4
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 8.4e-81 304.7 273 61.9
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.6e-79 300.4 274 60.2
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 1.3e-78 297.4 240 67.1
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 3.9e-78 295.8 224 70.5
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 8.7e-78 294.7 272 65.4
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 3.3e-77 292.7 271 63.1
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 2.9e-73 279.6 236 63.1
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.9e-73 279.6 219 71.2
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.1e-67 261.2 166 77.7
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 1.2e-66 257.7 209 63.2
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 2.1e-63 246.9 231 59.3
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 1.2e-58 231.1 185 68.6
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 5.0e-57 225.7 172 66.9
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 8.5e-57 224.9 267 51.3
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 2.6e-53 213.4 186 68.8
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 4.5e-42 176.0 150 62.7
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 1.3e-36 157.9 180 55.0
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.9e-34 149.1 265 40.0
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 2.5e-24 117.1 81 72.8
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 4.0e-22 109.8 131 50.4
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 1.2e-13 81.6 94 53.2
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 2.6e-13 80.5 91 52.7
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 1.3e-12 78.2 94 53.2
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 7.3e-08 62.4 66 51.5
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 2.8e-07 60.5 66 51.5


User provided reference genes

Program Settings