Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.2e-71 272.3 152 100.0
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 5.7e-67 257.7 152 91.4
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 3.9e-60 235.0 151 81.5
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 3.9e-60 235.0 152 81.6
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 6.7e-60 234.2 152 81.6
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 6.7e-60 234.2 152 81.6
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.2e-53 213.4 156 75.0
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 7.9e-45 184.1 152 69.7
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 3.9e-44 181.8 152 68.4
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.5e-43 179.9 152 66.4
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 5.7e-43 177.9 150 66.7
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 5.7e-43 177.9 152 67.1
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 7.4e-43 177.6 152 67.1
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 7.4e-43 177.6 152 66.4
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 2.2e-42 176.0 152 65.8
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 2.2e-42 176.0 152 67.1
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 3.7e-42 175.3 152 65.8
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 4.8e-42 174.9 152 66.4
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 6.3e-42 174.5 152 61.2
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 6.3e-42 174.5 152 64.5
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 6.3e-42 174.5 152 66.4
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.4e-41 173.3 152 65.1
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 1.4e-41 173.3 152 66.4
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 3.1e-41 172.2 152 63.8
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 5.3e-41 171.4 152 63.8
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.3e-41 171.4 152 64.5
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 5.3e-41 171.4 152 64.5
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 9.1e-41 170.6 152 65.8
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 2.6e-40 169.1 152 63.2
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 2.6e-40 169.1 152 62.5
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 5.9e-40 167.9 152 65.1
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 5.9e-40 167.9 152 64.5
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 5.9e-40 167.9 152 62.5
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 7.7e-40 167.5 133 68.4
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.0e-39 167.2 152 63.2
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 1.7e-39 166.4 152 63.8
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 2.9e-39 165.6 152 61.8
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 2.9e-39 165.6 151 62.9
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 3.8e-39 165.2 152 61.8
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.5e-38 163.3 152 61.8
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 4.2e-38 161.8 152 59.9
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 4.2e-38 161.8 144 61.8
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 7.2e-38 161.0 152 61.8
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 9.4e-38 160.6 152 61.8
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 9.4e-38 160.6 152 59.9
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.2e-37 160.2 149 61.7
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.2e-37 160.2 143 62.9
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.2e-37 160.2 152 60.5
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 2.1e-37 159.5 152 60.5
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 3.6e-37 158.7 153 60.1
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 4.7e-37 158.3 152 61.2
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 6.1e-37 157.9 142 63.4
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 8.0e-37 157.5 142 62.7
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.0e-36 157.1 143 61.5
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 1.8e-36 156.4 152 61.2
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 3.0e-36 155.6 152 63.8
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 3.0e-36 155.6 152 62.5
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.0e-36 155.6 152 59.9
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 5.2e-36 154.8 152 61.2
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 2.0e-35 152.9 142 60.6
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 4.4e-35 151.8 145 62.1
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 5.7e-35 151.4 138 60.1
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 7.5e-35 151.0 141 58.2
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.7e-34 149.8 152 55.9
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.3e-34 147.9 138 60.9
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.7e-32 142.5 122 62.3
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.7e-32 142.5 138 58.0
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 2.7e-32 142.5 120 62.5
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 5.9e-32 141.4 152 61.8
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 2.2e-31 139.4 152 59.9
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 5.0e-31 138.3 128 63.3
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 6.5e-31 137.9 128 62.5
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 2.5e-30 136.0 152 53.3
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 2.5e-30 136.0 152 54.6
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 3.2e-30 135.6 152 50.0
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 4.2e-30 135.2 152 60.5
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.5e-30 134.8 122 63.9
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 5.5e-30 134.8 122 63.9
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 7.2e-30 134.4 152 52.6
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.6e-29 133.3 153 52.3
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.6e-29 133.3 153 52.3
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 2.1e-29 132.9 152 57.9
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.0e-29 131.0 153 51.6
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.3e-28 129.4 112 64.3
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 3.0e-28 129.0 152 53.3
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 3.0e-28 129.0 152 52.6
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 3.0e-28 129.0 152 52.6
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 3.0e-28 129.0 152 52.6
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.0e-28 129.0 152 52.6
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.0e-28 129.0 115 60.9
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 3.0e-28 129.0 152 52.6
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 3.0e-28 129.0 152 52.6
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 3.0e-28 129.0 152 51.3
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.2e-28 128.3 152 53.9
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 6.8e-28 127.9 152 52.0
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 6.8e-28 127.9 121 58.7
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 8.8e-28 127.5 152 53.9
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.8e-28 127.5 131 55.0
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.2e-27 127.1 152 52.0
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.2e-27 127.1 152 52.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 1.5e-27 126.7 152 52.6
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-27 126.3 118 61.0
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.0e-27 126.3 119 56.3
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 2.6e-27 125.9 152 51.3
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 3.4e-27 125.6 120 57.5
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 3.4e-27 125.6 152 51.3
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.7e-26 123.2 152 48.7
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.7e-26 123.2 152 48.7
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.7e-26 123.2 153 54.2
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 8.3e-26 120.9 112 60.7
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 4.1e-25 118.6 126 53.2
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 7.0e-25 117.9 113 59.3
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 9.1e-25 117.5 153 51.0
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 3.8e-23 112.1 145 45.5
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 3.2e-22 109.0 152 48.0
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 2.0e-19 99.8 54 88.9
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.4e-19 99.0 122 56.6
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 5.7e-19 98.2 152 38.8
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 4.9e-18 95.1 91 58.2
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 2.7e-16 89.4 78 66.7
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 5.9e-16 88.2 100 57.0
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.0e-15 87.4 87 59.8
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-14 84.0 80 57.5
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 4.3e-14 82.0 77 61.0
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.0e-12 75.9 104 45.2
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 4.0e-12 75.5 81 49.4
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.5e-11 73.6 104 44.2
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 1.6e-08 63.5 87 49.4
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 2.7e-08 62.8 59 52.5
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.7e-07 60.1 76 44.7
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.6e-07 57.8 102 43.1
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 8.6e-07 57.8 102 43.1


User provided reference genes

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