Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 2.3e-47 191.8 92 100.0
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 2.8e-29 131.7 74 86.5
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 5.3e-28 127.5 74 82.4
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 5.3e-28 127.5 74 82.4
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 3.5e-27 124.8 74 86.5
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 3.7e-21 104.8 75 73.3
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 1.4e-20 102.8 74 71.6
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 2.4e-20 102.1 88 64.8
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 9.1e-20 100.1 74 71.6
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 7.7e-19 97.1 77 66.2
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 7.7e-19 97.1 77 66.2
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 1.3e-18 96.3 62 74.2
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 1.7e-18 95.9 77 64.9
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 2.2e-18 95.5 71 70.4
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 2.9e-18 95.1 102 50.0
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 5.0e-18 94.4 102 50.0
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 5.0e-18 94.4 77 67.5
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 8.5e-18 93.6 62 74.2
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 1.9e-17 92.4 78 62.8
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 3.2e-17 91.7 69 68.1
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 3.2e-17 91.7 80 57.5
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 3.2e-17 91.7 62 75.8
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 9.5e-17 90.1 75 64.0
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 9.5e-17 90.1 75 64.0
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 9.5e-17 90.1 75 64.0
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 1.2e-16 89.7 80 66.2
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 1.2e-16 89.7 80 66.2
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 1.6e-16 89.4 80 66.2
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 1.6e-16 89.4 67 71.6
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 2.1e-16 89.0 81 56.8
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 2.8e-16 88.6 80 66.2
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 2.8e-16 88.6 80 66.2
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 3.6e-16 88.2 80 66.2
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 3.6e-16 88.2 77 59.7
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 3.6e-16 88.2 77 63.6
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 8.0e-16 87.0 75 61.3
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 8.0e-16 87.0 75 65.3
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 1.4e-15 86.3 77 62.3
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 2.3e-15 85.5 80 60.0
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 3.0e-15 85.1 80 63.8
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 3.0e-15 85.1 80 62.5
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 3.0e-15 85.1 79 59.5
PGSC0003DMG400000976 Solanum tuberosum HOM05D007503 ORTHO05D009487 3.0e-15 85.1 54 81.5
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 3.0e-15 85.1 77 59.7
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 4.0e-15 84.7 80 62.5
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 4.0e-15 84.7 75 64.0
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 4.0e-15 84.7 60 70.0
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 4.0e-15 84.7 71 64.8
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 5.2e-15 84.3 80 61.2
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 5.2e-15 84.3 80 61.2
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 6.8e-15 84.0 79 59.5
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 6.8e-15 84.0 79 60.8
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 6.8e-15 84.0 69 60.9
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 6.8e-15 84.0 60 70.0
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 8.8e-15 83.6 80 61.2
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 8.8e-15 83.6 66 63.6
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 8.8e-15 83.6 80 61.2
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 1.2e-14 83.2 60 71.7
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 1.2e-14 83.2 60 71.7
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 1.2e-14 83.2 56 75.0
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 1.2e-14 83.2 80 60.0
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 1.2e-14 83.2 71 63.4
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 2.0e-14 82.4 69 60.9
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 2.0e-14 82.4 58 69.0
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 2.6e-14 82.0 70 61.4
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 2.6e-14 82.0 68 60.3
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 2.6e-14 82.0 79 58.2
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 3.4e-14 81.6 68 60.3
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 3.4e-14 81.6 78 56.4
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 3.4e-14 81.6 71 60.6
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 4.4e-14 81.3 68 61.8
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 7.5e-14 80.5 68 61.8
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 9.8e-14 80.1 79 58.2
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 1.7e-13 79.3 77 58.4
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 2.2e-13 79.0 77 54.5
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 2.2e-13 79.0 78 55.1
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 2.8e-13 78.6 74 54.1
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 2.8e-13 78.6 79 57.0
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 3.7e-13 78.2 79 55.7
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 6.3e-13 77.4 74 58.1
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 6.3e-13 77.4 60 65.0
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 1.4e-12 76.3 52 67.3
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 1.8e-12 75.9 70 57.1
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 2.4e-12 75.5 59 59.3
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 9.2e-12 73.6 76 53.9
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 9.2e-12 73.6 76 52.6
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 1.6e-11 72.8 56 71.4
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 2.7e-11 72.0 72 50.0
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 3.5e-11 71.6 51 66.7
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 1.7e-10 69.3 58 56.9
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 2.9e-10 68.6 74 48.6
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 6.6e-10 67.4 54 66.7
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 4.3e-09 64.7 73 47.9
Mapoly0109s0063 Marchantia polymorpha HOM05D007503 ORTHO05D009487 7.3e-09 63.9 43 72.1
BcaC02g09481 Brassica carinata HOM05D007503 ORTHO05D009487 3.0e-07 58.5 53 66.0
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 8.9e-07 57.0 37 78.4
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 8.9e-07 57.0 77 48.1
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 8.9e-07 57.0 77 48.1
HPP92_021450 Vanilla planifolia HOM05D007503 ORTHO05D009487 8.9e-07 57.0 48 60.4
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 1.2e-06 56.6 45 62.2
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 2.0e-06 55.8 45 62.2
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 5.7e-06 54.3 54 57.4


User provided reference genes

Program Settings