Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 8.7e-140 500.4 264 100.0
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 5.9e-112 407.9 224 96.4
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.8e-84 316.6 224 77.7
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 5.4e-81 305.1 224 76.3
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 8.0e-69 264.6 224 66.1
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.7e-66 256.9 224 67.0
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 2.0e-64 250.0 271 53.9
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.2e-59 234.2 221 62.9
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.0e-55 221.1 226 58.0
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.3e-55 219.9 227 59.9
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 1.1e-54 217.6 231 56.7
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 2.5e-54 216.5 231 56.7
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.3e-54 216.1 223 60.5
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 1.6e-53 213.8 269 52.0
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 2.1e-53 213.4 200 63.0
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 3.6e-53 212.6 234 54.3
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 1.8e-52 210.3 231 55.4
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 5.2e-52 208.8 229 57.2
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.5e-51 207.2 232 53.9
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.0e-51 206.8 235 53.2
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.0e-51 206.8 226 58.8
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 4.4e-51 205.7 230 54.8
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 4.4e-51 205.7 233 54.1
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 4.4e-51 205.7 231 54.1
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.8e-51 205.3 233 52.8
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 9.9e-51 204.5 229 55.9
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.3e-50 204.1 234 52.6
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.7e-50 203.8 227 58.1
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 4.1e-49 199.1 184 64.7
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 9.2e-49 198.0 231 54.5
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.7e-48 196.4 291 46.0
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.7e-48 196.4 291 46.0
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.0e-47 194.5 225 52.4
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 3.0e-47 193.0 231 54.5
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 2.5e-46 189.9 231 51.5
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.6e-46 188.7 231 52.8
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 7.3e-46 188.3 235 54.0
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.2e-45 187.6 231 52.4
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.1e-45 186.8 231 51.9
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 4.7e-45 185.7 227 52.9
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 4.7e-45 185.7 228 51.3
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 6.2e-45 185.3 228 52.2
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.8e-44 183.7 238 50.0
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.8e-44 183.7 238 50.0
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 6.8e-44 181.8 233 51.1
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.0e-43 180.3 169 61.5
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.4e-43 179.5 230 52.6
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 4.4e-43 179.1 325 41.2
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 4.4e-43 179.1 146 71.2
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 7.6e-43 178.3 146 70.5
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.3e-42 177.6 234 50.0
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 2.9e-42 176.4 216 53.2
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 3.8e-42 176.0 223 53.4
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 4.9e-42 175.6 230 51.7
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 6.4e-42 175.3 240 47.9
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 6.4e-42 175.3 224 50.9
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.4e-41 174.1 228 50.0
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.9e-41 173.7 206 53.4
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 4.2e-41 172.6 232 49.6
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 7.1e-41 171.8 225 50.2
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 9.3e-41 171.4 147 68.0
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.6e-40 170.6 225 48.0
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.6e-40 170.6 222 51.8
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 6.0e-40 168.7 255 47.8
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 7.8e-40 168.3 229 50.2
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.7e-39 167.2 234 47.9
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 6.6e-39 165.2 228 48.7
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 8.7e-39 164.9 230 49.6
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 8.7e-39 164.9 230 49.6
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.1e-38 164.5 226 49.1
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.9e-38 163.7 212 53.3
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.9e-38 163.7 212 53.3
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.5e-38 163.3 225 50.7
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 2.5e-38 163.3 185 55.1
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.6e-37 160.6 228 46.9
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 2.1e-37 160.2 184 54.9
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 4.8e-37 159.1 147 61.9
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 4.8e-37 159.1 147 61.9
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.1e-36 157.9 224 44.6
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.5e-35 154.1 228 46.5
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 5.8e-35 152.1 236 47.9
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 1.7e-34 150.6 146 61.6
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 4.9e-34 149.1 209 47.8
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 8.4e-34 148.3 231 43.3
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.1e-33 147.9 236 42.8
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 3.2e-33 146.4 237 43.5
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.2e-33 146.0 223 47.5
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 3.5e-32 142.9 170 50.6
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 4.6e-32 142.5 233 44.2
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 4.6e-32 142.5 223 48.4
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 6.0e-32 142.1 237 42.2
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 6.0e-32 142.1 236 43.2
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.0e-31 141.4 243 39.9
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 1.3e-31 141.0 144 56.9
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 3.0e-31 139.8 233 41.6
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 6.6e-31 138.7 153 52.9
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.1e-30 137.9 240 41.7
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.1e-30 137.9 228 46.1
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 5.6e-30 135.6 239 43.5
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 7.4e-30 135.2 233 42.5
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 6.2e-29 132.1 281 39.5
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.8e-28 130.6 235 40.9
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 3.1e-28 129.8 165 46.7
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.5e-27 127.5 148 50.7
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 3.8e-26 122.9 230 40.0
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 8.4e-26 121.7 337 33.2
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.9e-25 120.6 286 34.6
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.2e-24 117.9 319 33.2
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 2.1e-24 117.1 146 49.3
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 1.8e-23 114.0 143 48.3
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 3.3e-22 109.8 231 39.4
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.6e-21 107.5 93 59.1
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.1e-20 104.8 149 45.0
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 6.9e-20 102.1 89 60.7
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 2.0e-19 100.5 210 42.9
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 5.8e-19 99.0 184 38.0
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.4e-17 94.4 230 35.7
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.5e-17 93.6 225 35.1
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 3.2e-17 93.2 63 73.0
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 4.2e-17 92.8 229 35.4
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 5.5e-17 92.4 229 34.5
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 7.1e-17 92.0 152 43.4
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 9.3e-17 91.7 69 66.7
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 3.5e-16 89.7 224 35.7
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 6.0e-16 89.0 207 36.2
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 1.8e-15 87.4 231 32.5
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.9e-15 86.3 230 35.7
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.7e-14 82.4 135 38.5
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.7e-14 82.4 135 38.5
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 5.7e-14 82.4 135 38.5
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 8.2e-13 78.6 288 30.6
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 8.2e-13 78.6 149 38.9
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 6.9e-12 75.5 82 58.5
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 6.9e-12 75.5 82 58.5
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.2e-11 74.7 100 50.0
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 1.5e-11 74.3 82 54.9
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 5.9e-11 72.4 151 36.4
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 1.7e-10 70.9 79 51.9
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 2.2e-10 70.5 151 34.4
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 2.2e-10 70.5 66 54.5
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 2.2e-10 70.5 144 34.7
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 8.5e-10 68.6 151 33.8
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 1.4e-09 67.8 62 56.5
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 1.4e-09 67.8 59 66.1
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 3.2e-09 66.6 286 28.3
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 1.2e-08 64.7 149 32.2
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.2e-08 64.7 68 54.4


User provided reference genes

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