Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.0e-105 385.2 194 100.0
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.2e-66 256.9 207 64.7
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-64 250.4 206 62.6
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.2e-64 250.4 207 63.3
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.0e-64 249.6 205 63.4
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 2.0e-64 249.6 207 62.3
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 5.7e-64 248.1 204 62.3
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 7.5e-64 247.7 207 62.3
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.7e-63 246.5 206 61.2
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 3.7e-63 245.4 205 60.5
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 6.3e-63 244.6 201 60.7
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.4e-62 243.4 212 61.3
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 4.1e-62 241.9 207 61.4
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 4.1e-62 241.9 205 62.0
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.1e-62 241.9 212 60.8
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.4e-62 241.5 207 60.4
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 9.1e-62 240.7 210 61.9
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.7e-60 236.5 200 60.5
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.2e-60 236.1 191 62.3
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 5.0e-60 235.0 205 58.0
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.5e-59 233.4 205 57.6
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 3.2e-59 232.3 197 60.4
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 3.2e-59 232.3 214 60.3
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 3.2e-59 232.3 194 59.3
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 4.2e-59 231.9 194 59.3
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 5.5e-59 231.5 194 58.2
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 8.0e-58 227.6 184 61.4
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 6.8e-57 224.6 202 57.4
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 8.8e-57 224.2 203 59.1
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 8.8e-57 224.2 206 55.3
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 1.5e-56 223.4 208 56.7
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.5e-56 223.4 205 55.6
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.5e-56 223.4 201 56.7
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 2.0e-56 223.0 174 64.4
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 2.0e-56 223.0 205 56.6
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 4.4e-56 221.9 206 55.3
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.7e-55 219.9 234 52.1
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 2.2e-55 219.5 193 58.0
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 2.2e-55 219.5 182 61.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 2.8e-55 219.2 180 62.2
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 2.8e-55 219.2 205 54.6
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.8e-55 219.2 181 62.4
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 3.7e-55 218.8 200 55.5
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 3.7e-55 218.8 194 55.7
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.1e-54 217.2 205 53.7
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.1e-54 217.2 182 60.4
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.1e-54 217.2 182 60.4
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.4e-54 216.9 181 60.8
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 2.4e-54 216.1 208 56.2
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 2.4e-54 216.1 199 56.3
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.4e-54 216.1 210 56.7
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 3.1e-54 215.7 216 53.7
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 3.1e-54 215.7 203 55.7
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 3.1e-54 215.7 203 55.7
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 5.4e-54 214.9 178 60.7
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 7.0e-54 214.5 186 59.7
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.2e-53 213.8 186 58.1
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 1.6e-53 213.4 195 55.9
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.6e-53 213.4 204 55.4
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.7e-53 212.6 189 58.7
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 3.5e-53 212.2 194 56.7
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 3.5e-53 212.2 204 54.9
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 4.5e-53 211.8 177 61.6
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 5.9e-53 211.5 206 54.9
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 5.9e-53 211.5 134 74.6
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 5.9e-53 211.5 186 57.0
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.9e-53 211.5 208 57.7
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 7.7e-53 211.1 206 54.9
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 7.7e-53 211.1 206 54.9
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 7.7e-53 211.1 204 52.9
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 7.7e-53 211.1 186 58.1
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 7.7e-53 211.1 194 54.6
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.3e-52 210.3 182 59.3
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.3e-52 210.3 179 59.8
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 2.3e-52 209.5 207 52.7
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 2.3e-52 209.5 204 53.9
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 2.3e-52 209.5 196 55.1
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.9e-52 209.1 238 47.9
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 6.6e-52 208.0 205 53.2
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 8.6e-52 207.6 204 51.5
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.1e-51 207.2 200 53.5
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 2.5e-51 206.1 201 52.7
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 3.3e-51 205.7 179 57.5
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 5.6e-51 204.9 179 57.5
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 7.3e-51 204.5 199 51.3
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-50 203.8 131 74.0
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 2.1e-50 203.0 191 52.4
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 2.1e-50 203.0 191 52.4
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.1e-50 203.0 193 57.0
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 2.1e-50 203.0 178 56.7
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 3.6e-50 202.2 129 74.4
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 3.6e-50 202.2 131 71.0
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.6e-50 202.2 178 56.7
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.7e-50 201.8 129 72.9
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 4.7e-50 201.8 191 52.9
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 4.7e-50 201.8 178 56.2
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.0e-49 200.7 196 51.5
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.4e-49 200.3 201 54.2
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.3e-49 199.5 129 71.3
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 2.3e-49 199.5 174 57.5
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.3e-49 199.5 199 49.2
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.3e-49 199.5 195 50.8
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 4.0e-49 198.7 200 53.5
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 4.0e-49 198.7 180 54.4
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 6.8e-49 198.0 178 57.3
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 8.9e-49 197.6 177 56.5
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 8.9e-49 197.6 185 55.1
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 8.9e-49 197.6 182 57.1
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.5e-48 196.8 206 49.5
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 3.4e-48 195.7 135 68.9
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 4.4e-48 195.3 182 53.3
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 5.7e-48 194.9 129 70.5
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 9.8e-48 194.1 166 60.2
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 8.3e-47 191.0 129 66.7
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.4e-46 190.3 205 49.8
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.8e-46 189.9 129 65.1
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 5.4e-46 188.3 122 71.3
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 7.0e-46 188.0 125 67.2
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.2e-45 187.2 211 46.4
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.5e-45 185.7 134 66.4
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 5.9e-45 184.9 189 50.3
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 2.5e-43 179.5 215 47.0
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.0e-41 174.1 153 54.9
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.4e-41 173.7 152 53.9
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 2.6e-40 169.5 138 58.0
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.2e-39 166.4 162 55.6
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.9e-39 166.0 132 59.1
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.9e-39 166.0 182 50.5
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 7.0e-38 161.4 132 53.8
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.6e-37 160.2 160 52.5
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.0e-36 156.0 137 52.6
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 9.5e-35 151.0 158 55.1
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 6.2e-34 148.3 173 46.8
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 5.8e-32 141.7 145 52.4
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 2.9e-31 139.4 124 57.3
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.4e-30 136.3 143 49.7
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.7e-29 132.9 136 51.5
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 8.6e-28 127.9 164 48.2
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 3.6e-26 122.5 135 46.7
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 2.6e-24 116.3 168 41.7
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 4.9e-23 112.1 81 66.7
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 7.8e-21 104.8 141 41.8
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.0e-20 104.4 87 65.5
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.5e-19 100.5 79 60.8
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.6e-16 89.7 121 40.5
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 7.6e-16 88.2 83 55.4
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.2e-15 86.7 125 36.8
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 6.4e-15 85.1 124 37.9
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.4e-14 84.0 109 44.0
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 9.3e-14 81.3 192 30.7
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 2.3e-12 76.6 140 32.9
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.6e-11 72.0 37 91.9
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.8e-09 67.0 118 32.2
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.0e-09 65.9 144 31.2
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 9.0e-09 64.7 151 29.1
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 1.1e-06 57.8 83 41.0


User provided reference genes

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