Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 0.0e+00 1142.5 632 100.0
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.5e-267 926.0 645 83.1
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.1e-129 468.0 727 48.6
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 4.8e-120 436.0 727 49.1
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 6.7e-114 415.6 655 49.2
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 1.5e-113 414.5 544 53.7
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.5e-86 323.6 659 42.9
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 9.8e-81 305.4 740 37.7
Nitab4.5_0004928g0010 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.1e-71 273.5 232 76.7
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.8e-66 258.1 421 46.6
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.8e-34 151.8 264 40.9
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 5.3e-34 150.2 271 40.6
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 2.0e-33 148.3 204 46.1
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 8.4e-32 142.9 505 33.3
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 5.5e-31 140.2 516 30.0
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.2e-30 139.0 535 29.9
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 2.5e-28 131.3 133 57.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 5.7e-28 130.2 310 34.8
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 1.3e-27 129.0 373 33.0
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.3e-27 129.0 425 32.0
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 6.3e-27 126.7 274 38.0
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 2.4e-26 124.8 493 30.4
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 2.4e-26 124.8 472 30.9
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 6.9e-26 123.2 343 32.9
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.5e-25 122.1 357 32.8
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 4.5e-25 120.6 233 39.5
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 7.7e-25 119.8 385 30.4
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 6.5e-24 116.7 267 37.1
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 6.5e-24 116.7 506 28.1
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.1e-23 115.9 297 34.7
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.4e-23 115.5 503 31.0
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 1.9e-23 115.2 348 33.0
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 2.5e-23 114.8 529 29.5
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 3.2e-23 114.4 344 31.7
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 4.2e-23 114.0 306 30.4
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 7.2e-23 113.2 296 34.5
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 6.1e-22 110.2 255 38.4
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.8e-21 108.6 353 31.4
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 6.7e-21 106.7 400 30.0
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 1.1e-20 105.9 244 33.2
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.5e-20 105.5 445 29.2
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.3e-20 104.4 312 31.1
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 3.3e-20 104.4 312 31.1
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.2e-19 101.7 260 30.8
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 2.8e-19 101.3 465 29.7
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 3.7e-19 100.9 349 29.8
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 8.2e-19 99.8 264 31.8
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.4e-18 99.0 256 30.5
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.4e-18 99.0 316 33.5
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.8e-18 98.6 404 30.0
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 3.1e-18 97.8 433 28.9
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 3.1e-18 97.8 378 30.2
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 4.1e-18 97.4 376 30.9
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 6.9e-18 96.7 428 28.5
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 6.9e-18 96.7 232 33.6
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 6.9e-18 96.7 563 29.8
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 9.1e-18 96.3 347 30.0
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 9.1e-18 96.3 347 30.0
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.2e-17 95.9 446 28.3
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.2e-17 95.9 279 29.7
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.5e-17 95.5 126 42.1
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.5e-17 95.5 308 30.2
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 2.0e-17 95.1 160 42.5
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 3.4e-17 94.4 448 29.7
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.0e-16 92.8 281 33.5
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.3e-16 92.4 316 31.0
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-16 92.0 394 28.7
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-16 92.0 394 28.7
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.2e-16 91.7 397 27.0
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 2.2e-16 91.7 362 30.7
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 2.2e-16 91.7 273 33.0
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 2.9e-16 91.3 296 32.1
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.1e-15 89.4 139 40.3
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.4e-15 89.0 278 32.7
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.9e-15 88.6 367 29.4
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.5e-15 88.2 423 25.8
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 5.5e-15 87.0 508 26.2
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 5.5e-15 87.0 435 29.2
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 7.2e-15 86.7 321 30.5
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 7.2e-15 86.7 425 29.9
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 9.4e-15 86.3 270 28.9
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 9.4e-15 86.3 301 29.9
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.2e-14 85.9 355 27.3
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.6e-14 85.5 366 27.6
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.6e-14 85.5 152 42.1
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 2.7e-14 84.7 140 43.6
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.7e-14 84.7 293 28.7
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.7e-14 84.7 509 29.3
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 3.6e-14 84.3 357 27.2
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 3.6e-14 84.3 286 30.4
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 3.6e-14 84.3 483 25.9
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.9e-14 83.2 274 29.6
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 2.3e-13 81.6 354 26.0
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 2.3e-13 81.6 214 34.6
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 2.3e-13 81.6 296 29.7
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 2.3e-13 81.6 279 31.2
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 2.3e-13 81.6 311 28.6
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 3.0e-13 81.3 359 31.2
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.9e-13 80.9 492 24.4
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 3.9e-13 80.9 159 35.2
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 3.9e-13 80.9 159 35.2
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 3.9e-13 80.9 131 38.9
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 3.9e-13 80.9 497 25.2
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 5.1e-13 80.5 544 24.3
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 6.7e-13 80.1 511 26.0
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 6.7e-13 80.1 344 25.6
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.0e-12 78.6 391 27.1
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 2.6e-12 78.2 526 25.5
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.6e-12 78.2 358 30.4
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 3.3e-12 77.8 410 27.8
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 4.4e-12 77.4 409 26.7
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 4.4e-12 77.4 464 26.9
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.3e-11 75.9 552 24.5
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 2.2e-11 75.1 493 26.4
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 2.8e-11 74.7 429 27.5
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 4.8e-11 73.9 556 24.5
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.3e-11 73.6 380 25.8
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 6.3e-11 73.6 156 37.2
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.1e-10 72.8 421 27.1
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.1e-10 72.8 410 26.6
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.4e-10 72.4 526 25.5
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.8e-10 72.0 151 37.1
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.4e-10 71.6 388 27.8
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 2.4e-10 71.6 250 31.2
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.1e-10 71.2 60 55.0
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 4.1e-10 70.9 407 25.6
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 5.3e-10 70.5 422 25.8
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 9.1e-10 69.7 433 25.6
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 1.2e-09 69.3 385 29.4
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 1.5e-09 68.9 244 30.7
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.0e-09 68.6 553 23.7
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 3.5e-09 67.8 387 26.9
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 4.5e-09 67.4 430 28.1
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 5.9e-09 67.0 299 27.8
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 7.7e-09 66.6 497 25.2
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 1.7e-08 65.5 509 25.9
Solyc10g018880.1 Solanum lycopersicum HOM05D004299 ORTHO05D003557 1.7e-08 65.5 132 42.4
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 8.5e-08 63.2 39 74.4
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 8.5e-08 63.2 539 25.2
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 1.4e-07 62.4 457 24.9
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.4e-07 62.4 99 40.4
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 1.9e-07 62.0 48 64.6
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 1.9e-07 62.0 48 64.6
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 4.2e-07 60.8 286 28.7
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 5.5e-07 60.5 43 67.4
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 7.2e-07 60.1 136 36.8
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 2.7e-06 58.2 98 43.9
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 2.7e-06 58.2 367 24.8
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.6e-06 57.8 33 75.8
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 3.6e-06 57.8 144 31.9
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 4.7e-06 57.4 36 75.0
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 4.7e-06 57.4 142 34.5


User provided reference genes

Program Settings