Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.0e-88 330.1 172 100.0
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 2.5e-63 245.7 181 76.8
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.0e-45 185.3 110 86.4
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 5.3e-45 184.9 125 78.4
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 6.9e-45 184.5 110 85.5
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.4e-44 182.2 110 85.5
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.5e-44 181.8 110 85.5
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.2e-43 179.5 110 84.5
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.9e-42 176.4 110 80.9
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 2.4e-42 176.0 120 75.0
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.4e-42 176.0 113 79.6
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 4.2e-42 175.3 122 75.4
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 4.2e-42 175.3 110 81.8
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 4.2e-42 175.3 127 74.0
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 7.1e-42 174.5 110 80.9
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 7.1e-42 174.5 120 74.2
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 7.1e-42 174.5 113 79.6
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 7.1e-42 174.5 113 79.6
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 7.1e-42 174.5 113 79.6
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 9.3e-42 174.1 110 80.9
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 9.3e-42 174.1 110 81.8
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 9.3e-42 174.1 125 72.8
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.2e-41 173.7 113 79.6
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 1.2e-41 173.7 102 87.3
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.6e-41 173.3 124 73.4
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.6e-41 173.3 113 78.8
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 2.1e-41 172.9 110 80.0
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.1e-41 172.9 113 77.9
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 2.1e-41 172.9 125 72.0
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.5e-41 172.2 110 79.1
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.5e-41 172.2 110 81.8
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.5e-41 172.2 110 80.9
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 4.6e-41 171.8 119 75.6
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.6e-41 171.8 117 75.2
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.6e-41 171.8 110 78.2
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 6.0e-41 171.4 98 87.8
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 6.0e-41 171.4 122 73.8
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 7.9e-41 171.0 110 78.2
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 7.9e-41 171.0 110 79.1
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 7.9e-41 171.0 110 76.4
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.9e-41 171.0 110 78.2
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 7.9e-41 171.0 120 73.3
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 7.9e-41 171.0 110 79.1
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 1.0e-40 170.6 110 78.2
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 1.0e-40 170.6 124 73.4
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 1.0e-40 170.6 110 78.2
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.3e-40 170.2 125 71.2
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.8e-40 169.9 110 76.4
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.8e-40 169.9 98 86.7
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.8e-40 169.9 98 87.8
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 2.3e-40 169.5 128 70.3
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.3e-40 169.5 110 80.9
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 3.0e-40 169.1 130 68.5
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 5.1e-40 168.3 124 71.8
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 6.7e-40 167.9 122 70.5
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 8.7e-40 167.5 110 76.4
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.1e-39 167.2 124 68.5
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.1e-39 167.2 110 77.3
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.5e-39 166.8 111 75.7
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.5e-39 166.8 110 78.2
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.9e-39 166.4 123 70.7
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.9e-39 166.4 131 67.9
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 2.5e-39 166.0 110 77.3
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 2.5e-39 166.0 110 76.4
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 3.3e-39 165.6 122 70.5
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 4.3e-39 165.2 110 76.4
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 4.3e-39 165.2 110 77.3
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 5.6e-39 164.9 110 75.5
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 5.6e-39 164.9 110 75.5
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 5.6e-39 164.9 111 74.8
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 7.4e-39 164.5 110 75.5
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 7.4e-39 164.5 110 74.5
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 7.4e-39 164.5 110 74.5
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 7.4e-39 164.5 110 74.5
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 7.4e-39 164.5 110 74.5
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 7.4e-39 164.5 110 74.5
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.4e-39 164.5 110 76.4
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 7.4e-39 164.5 121 71.1
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 7.4e-39 164.5 122 72.1
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 9.6e-39 164.1 125 68.0
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 9.6e-39 164.1 110 74.5
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-38 163.7 110 75.5
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.3e-38 163.7 110 74.5
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 2.8e-38 162.5 110 74.5
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 2.8e-38 162.5 124 68.5
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 3.7e-38 162.2 110 73.6
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.8e-38 161.8 110 73.6
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 4.8e-38 161.8 110 73.6
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 6.2e-38 161.4 110 73.6
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 8.2e-38 161.0 110 75.5
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.1e-37 160.6 102 79.4
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 1.8e-37 159.8 99 80.8
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 3.1e-37 159.1 120 67.5
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 3.1e-37 159.1 110 74.5
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 4.0e-37 158.7 110 71.8
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 4.0e-37 158.7 110 71.8
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 5.3e-37 158.3 110 74.5
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 6.9e-37 157.9 110 71.8
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 6.9e-37 157.9 110 71.8
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 1.5e-36 156.8 110 71.8
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 2.6e-36 156.0 110 70.9
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.3e-35 153.7 110 68.2
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.8e-35 152.1 112 71.4
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 3.8e-35 152.1 110 68.2
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 8.4e-35 151.0 98 76.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 8.4e-35 151.0 98 76.5
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 8.4e-35 151.0 122 66.4
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 7.1e-34 147.9 98 77.6
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.6e-33 146.7 98 79.6
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.6e-33 146.7 98 79.6
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.1e-33 146.4 96 75.0
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 6.0e-33 144.8 86 83.7
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 6.0e-33 144.8 110 64.5
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 1.0e-32 144.1 112 66.1
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.8e-32 143.3 110 68.2
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.5e-31 140.2 98 73.5
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 2.5e-31 139.4 94 72.3
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 5.7e-31 138.3 116 64.7
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 7.4e-31 137.9 122 63.9
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 7.4e-31 137.9 111 65.8
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 2.2e-30 136.3 110 65.5
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 1.1e-29 134.0 110 64.5
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.4e-29 133.7 124 61.3
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.5e-28 130.2 90 73.3
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 2.6e-28 129.4 110 63.6
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.0e-27 127.5 100 64.0
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 2.9e-27 125.9 85 76.5
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 8.5e-27 124.4 122 59.8
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 7.2e-26 121.3 115 60.0
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 6.1e-25 118.2 89 66.3
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 6.1e-25 118.2 70 84.3
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 6.7e-24 114.8 107 57.0
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 2.2e-22 109.8 100 59.0
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 6.3e-22 108.2 122 48.4
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 6.3e-22 108.2 108 51.9
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 8.2e-22 107.8 76 77.6
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.1e-21 105.5 98 61.2
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 5.3e-21 105.1 73 69.9
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 5.3e-21 105.1 110 55.5
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 6.9e-21 104.8 81 60.5
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 3.4e-20 102.4 89 57.3
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 4.5e-20 102.1 61 82.0
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.0e-19 100.9 122 45.1
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.0e-19 100.9 58 82.8
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.3e-19 100.5 87 56.3
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 3.8e-19 99.0 107 48.6
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 5.0e-19 98.6 122 45.9
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 2.5e-18 96.3 98 56.1
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 7.2e-18 94.7 120 43.3
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 4.7e-17 92.0 101 52.5
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.8e-16 90.1 118 44.1
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.9e-16 89.0 108 45.4
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 3.9e-16 89.0 112 46.4
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 1.1e-10 70.9 61 60.7
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 3.2e-10 69.3 75 50.7
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.4e-08 63.9 37 78.4


User provided reference genes

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