Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 8.6e-30 132.9 62 100.0
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.5e-21 104.8 48 100.0
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 5.2e-19 97.1 49 91.8
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 1.2e-18 95.9 47 93.6
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 2.6e-18 94.7 46 93.5
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 4.4e-18 94.0 49 89.8
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.1e-16 89.4 47 80.9
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.1e-16 89.4 47 80.9
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 2.4e-16 88.2 47 83.0
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 5.4e-16 87.0 56 71.4
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 5.4e-16 87.0 47 83.0
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 5.4e-16 87.0 46 84.8
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 5.4e-16 87.0 47 85.1
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 7.0e-16 86.7 44 86.4
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 7.0e-16 86.7 47 80.9
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 9.2e-16 86.3 47 83.0
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 9.2e-16 86.3 47 83.0
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 1.2e-15 85.9 47 76.6
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 2.7e-15 84.7 47 78.7
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.7e-15 84.7 48 79.2
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 3.5e-15 84.3 47 78.7
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 3.5e-15 84.3 47 74.5
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 4.6e-15 84.0 47 74.5
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 4.6e-15 84.0 47 74.5
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 6.0e-15 83.6 47 78.7
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 6.0e-15 83.6 47 76.6
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 6.0e-15 83.6 47 74.5
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 6.0e-15 83.6 47 74.5
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 7.8e-15 83.2 47 72.3
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 7.8e-15 83.2 47 78.7
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 7.8e-15 83.2 47 76.6
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.0e-14 82.8 47 80.9
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 1.0e-14 82.8 47 76.6
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 1.0e-14 82.8 47 72.3
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 1.3e-14 82.4 47 76.6
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 1.7e-14 82.0 47 70.2
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 2.3e-14 81.6 46 78.3
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 2.3e-14 81.6 47 76.6
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 3.0e-14 81.3 47 76.6
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 3.0e-14 81.3 47 76.6
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 3.0e-14 81.3 47 76.6
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 3.0e-14 81.3 47 76.6
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 3.0e-14 81.3 47 76.6
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 3.0e-14 81.3 47 72.3
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 3.0e-14 81.3 47 70.2
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 3.0e-14 81.3 47 76.6
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 3.0e-14 81.3 47 74.5
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 3.9e-14 80.9 47 72.3
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.9e-14 80.9 47 74.5
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.9e-14 80.9 47 74.5
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 3.9e-14 80.9 47 74.5
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 5.0e-14 80.5 47 72.3
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 5.0e-14 80.5 47 74.5
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 5.0e-14 80.5 47 70.2
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 5.0e-14 80.5 46 80.4
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 6.6e-14 80.1 47 72.3
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 6.6e-14 80.1 47 72.3
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 6.6e-14 80.1 47 72.3
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 6.6e-14 80.1 47 72.3
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 6.6e-14 80.1 47 74.5
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 8.6e-14 79.7 47 74.5
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 8.6e-14 79.7 47 72.3
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 8.6e-14 79.7 47 70.2
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 1.1e-13 79.3 47 72.3
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 1.1e-13 79.3 46 78.3
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.1e-13 79.3 46 78.3
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 1.1e-13 79.3 47 70.2
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.5e-13 79.0 47 72.3
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.9e-13 78.6 47 74.5
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 2.5e-13 78.2 47 68.1
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 3.3e-13 77.8 47 70.2
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 3.3e-13 77.8 47 70.2
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 3.3e-13 77.8 56 58.9
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 5.6e-13 77.0 47 70.2
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 5.6e-13 77.0 47 66.0
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 5.6e-13 77.0 46 76.1
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 7.3e-13 76.6 47 68.1
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 1.2e-12 75.9 47 68.1
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 1.6e-12 75.5 47 70.2
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 2.8e-12 74.7 47 70.2
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 3.6e-12 74.3 45 68.9
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 4.7e-12 73.9 46 67.4
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 4.7e-12 73.9 47 66.0
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 6.2e-12 73.6 47 68.1
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 1.1e-11 72.8 46 63.0
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 3.1e-11 71.2 44 70.5
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 4.0e-11 70.9 47 63.8
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 3.4e-10 67.8 42 71.4
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 3.4e-10 67.8 45 60.0
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 5.8e-10 67.0 46 63.0
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 5.8e-10 67.0 46 58.7
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 2.2e-09 65.1 44 61.4
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 1.1e-08 62.8 43 60.5
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 4.1e-08 60.8 42 57.1
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 2.7e-07 58.2 42 59.5
CAN.G631.4 Capsicum annuum HOM05D006884 ORTHO05D115160 5.1e-06 53.9 49 61.2


User provided reference genes

Program Settings