Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 0.0e+00 1412.9 711 100.0
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 0.0e+00 1244.2 649 96.6
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 0.0e+00 1144.0 758 78.5
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 0.0e+00 1118.6 758 76.1
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 1.6e-204 716.8 489 75.1
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 2.2e-193 679.9 751 48.5
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 1.0e-190 671.0 781 49.0
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 6.5e-190 668.3 791 48.5
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 3.6e-188 662.5 782 49.0
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 3.6e-188 662.5 977 41.2
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 4.1e-184 649.0 755 49.0
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.2e-183 647.5 790 45.9
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 7.7e-183 644.8 758 48.9
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.2e-180 637.5 756 46.7
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 3.3e-178 629.4 772 45.3
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 8.2e-177 624.8 764 45.9
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 1.4e-176 624.0 794 44.8
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 1.2e-175 620.9 795 44.8
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 3.8e-174 615.9 989 40.3
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 3.6e-172 609.4 756 46.6
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 1.4e-171 607.4 981 40.1
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.0e-171 606.3 792 45.2
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 4.0e-171 605.9 772 45.1
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 6.8e-171 605.1 792 45.1
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.2e-170 604.4 755 45.8
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 1.4e-168 597.4 748 45.6
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 3.1e-168 596.3 783 44.3
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 7.0e-168 595.1 773 45.0
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 1.6e-167 594.0 991 38.6
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.0e-167 593.6 770 44.4
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 5.9e-167 592.0 772 43.9
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 5.9e-167 592.0 753 46.1
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 7.7e-167 591.7 771 44.6
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 7.7e-167 591.7 771 44.6
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 6.8e-163 578.6 755 44.0
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 2.6e-162 576.6 796 43.7
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 1.2e-159 567.8 634 49.4
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 2.0e-159 567.0 998 38.0
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 3.6e-156 556.2 745 43.1
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 3.0e-155 553.1 765 44.4
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.5e-154 550.8 749 41.8
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 3.4e-154 549.7 752 42.3
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 1.7e-153 547.4 719 45.1
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.9e-153 546.6 762 44.6
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.4e-152 544.3 968 36.1
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 4.1e-152 542.7 745 41.9
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 7.0e-152 542.0 751 43.0
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 7.0e-152 542.0 654 47.1
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 1.6e-151 540.8 752 41.9
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 2.7e-151 540.0 748 41.8
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 7.8e-151 538.5 751 42.5
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 1.0e-150 538.1 749 42.1
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 5.0e-150 535.8 757 42.7
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.3e-149 533.1 758 43.9
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 1.2e-148 531.2 749 42.3
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 1.2e-148 531.2 792 39.9
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 2.3e-147 526.9 751 43.7
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 5.2e-147 525.8 750 42.7
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 3.4e-146 523.1 774 39.8
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 4.4e-146 522.7 769 40.2
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 7.5e-146 521.9 779 39.8
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 7.5e-146 521.9 779 39.8
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 9.8e-146 521.5 762 41.1
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 8.3e-145 518.5 972 35.9
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 8.3e-145 518.5 784 40.1
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 1.4e-144 517.7 756 41.1
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 5.4e-144 515.8 773 40.1
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 7.0e-144 515.4 755 40.4
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 1.2e-143 514.6 758 41.0
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.6e-143 512.7 753 42.6
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 7.3e-141 505.4 767 40.2
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 1.2e-140 504.6 752 41.8
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 6.8e-139 498.8 757 41.1
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 1.2e-138 498.0 785 40.3
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 5.8e-138 495.7 723 41.8
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 7.5e-138 495.4 758 42.5
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 2.2e-137 493.8 766 39.8
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 4.9e-137 492.7 895 36.5
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 7.8e-135 485.3 645 43.3
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 4.7e-132 476.1 958 33.5
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 1.8e-131 474.2 771 37.0
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 3.1e-131 473.4 771 37.4
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 8.9e-131 471.9 752 39.6
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 3.5e-127 459.9 706 40.8
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 6.6e-126 455.7 515 48.7
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 1.8e-123 447.6 579 44.9
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 5.2e-123 446.0 966 32.8
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 2.6e-122 443.7 964 32.6
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 1.7e-121 441.0 387 59.2
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.6e-119 434.5 650 39.1
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 3.3e-117 426.8 566 44.0
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 3.3e-117 426.8 977 31.7
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 9.6e-117 425.2 839 33.5
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 5.4e-112 409.5 714 37.7
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 2.5e-109 400.6 565 40.9
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 4.3e-109 399.8 507 44.0
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.8e-108 397.1 670 36.6
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 2.2e-105 387.5 549 41.5
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.5e-103 380.2 590 37.6
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 4.6e-103 379.8 962 29.8
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 5.1e-94 349.7 234 75.2
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 3.8e-89 333.6 544 39.2
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 5.0e-81 306.6 726 31.7
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 5.7e-77 293.1 454 37.2
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 3.0e-70 270.8 649 32.5
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 3.0e-70 270.8 698 30.9
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 4.2e-64 250.4 202 66.3
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 9.4e-64 249.2 826 26.4
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 4.7e-63 246.9 278 50.0
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 2.0e-61 241.5 477 33.5
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 2.9e-57 227.6 203 62.1
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 9.8e-53 212.6 933 25.1
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 1.8e-51 208.4 586 29.7
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 2.5e-48 198.0 276 40.6
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 9.5e-48 196.1 306 43.5
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-43 182.6 272 39.7
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 3.6e-39 167.5 210 46.2
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.3e-38 164.9 243 41.6
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 6.4e-36 156.8 339 31.0
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 4.1e-35 154.1 483 27.1
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.6e-34 152.1 188 45.2
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 3.5e-34 151.0 159 52.2
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 2.4e-27 128.3 197 37.1
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 2.0e-26 125.2 235 34.9
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 6.0e-26 123.6 211 34.1
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 5.6e-24 117.1 235 33.2
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 1.6e-18 99.0 141 45.4
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 1.2e-15 89.4 166 37.3
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 1.4e-14 85.9 64 59.4
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 1.4e-06 59.3 108 32.4
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 3.1e-06 58.2 42 69.0
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 4.0e-06 57.8 66 42.4
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 6.9e-06 57.0 80 35.0


User provided reference genes

Program Settings