Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 8.0e-71 270.4 145 100.0
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.5e-56 223.0 125 94.4
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 1.2e-55 219.9 125 93.6
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.6e-55 219.5 125 92.8
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 6.2e-55 217.6 125 92.0
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 9.9e-53 210.3 126 88.1
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 6.4e-52 207.6 125 86.4
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 6.4e-52 207.6 126 86.5
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 1.4e-51 206.5 125 88.0
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.9e-51 206.1 126 85.7
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 3.2e-51 205.3 126 84.1
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 3.2e-51 205.3 125 86.4
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 4.1e-51 204.9 125 86.4
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 7.1e-51 204.1 125 84.8
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 7.1e-51 204.1 125 85.6
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 7.1e-51 204.1 125 86.4
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.2e-50 203.4 125 84.0
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 4.6e-50 201.4 125 84.0
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 7.8e-50 200.7 125 80.8
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 7.8e-50 200.7 125 81.6
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 1.0e-49 200.3 125 81.6
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 1.7e-49 199.5 125 83.2
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 2.3e-49 199.1 125 82.4
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 3.0e-49 198.7 125 82.4
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 5.1e-49 198.0 125 80.8
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 8.7e-49 197.2 128 78.9
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 1.1e-48 196.8 125 81.6
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 1.5e-48 196.4 125 80.8
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.5e-48 196.4 125 82.4
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 1.5e-48 196.4 125 81.6
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 1.9e-48 196.1 125 80.0
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 3.3e-48 195.3 125 81.6
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.3e-48 194.1 125 80.0
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.3e-48 194.1 125 80.0
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 7.3e-48 194.1 128 76.6
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 9.6e-48 193.7 125 80.8
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.6e-47 193.0 125 79.2
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.6e-47 193.0 125 79.2
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.6e-47 193.0 125 79.2
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 2.8e-47 192.2 128 75.8
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.6e-47 191.8 125 77.6
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 3.6e-47 191.8 125 78.4
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 4.7e-47 191.4 125 81.6
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 6.2e-47 191.0 125 78.4
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 6.2e-47 191.0 125 80.0
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 6.2e-47 191.0 128 75.0
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 6.2e-47 191.0 125 80.0
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 6.2e-47 191.0 125 81.6
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 1.1e-46 190.3 128 74.2
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 2.4e-46 189.1 128 73.4
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 2.4e-46 189.1 128 73.4
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 2.4e-46 189.1 125 76.8
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 3.1e-46 188.7 132 75.0
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 4.0e-46 188.3 128 72.7
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 4.0e-46 188.3 128 74.2
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 5.2e-46 188.0 125 76.0
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 5.2e-46 188.0 125 77.6
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 6.9e-46 187.6 125 79.2
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 9.0e-46 187.2 128 72.7
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 9.0e-46 187.2 128 71.9
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 9.0e-46 187.2 125 76.0
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 1.2e-45 186.8 128 71.9
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 1.2e-45 186.8 125 76.8
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 1.2e-45 186.8 127 76.4
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 1.5e-45 186.4 128 72.7
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 1.5e-45 186.4 128 72.7
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 1.5e-45 186.4 128 72.7
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.5e-45 186.4 125 77.6
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.0e-45 186.0 125 77.6
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.0e-45 186.0 125 76.0
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.0e-45 186.0 126 75.4
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 2.0e-45 186.0 125 79.2
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 2.6e-45 185.7 128 77.3
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 2.6e-45 185.7 125 77.6
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 3.4e-45 185.3 128 72.7
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 3.4e-45 185.3 128 71.9
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 3.4e-45 185.3 128 71.9
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 4.4e-45 184.9 125 79.2
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 5.8e-45 184.5 128 71.9
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 7.6e-45 184.1 125 78.4
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.3e-44 183.3 129 71.3
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.2e-44 182.6 128 70.3
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 2.2e-44 182.6 125 75.2
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 2.9e-44 182.2 128 72.7
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 3.8e-44 181.8 125 74.4
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 8.4e-44 180.6 125 72.0
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 1.4e-43 179.9 125 76.0
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 1.4e-43 179.9 127 73.2
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.9e-43 179.5 125 72.0
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.9e-43 179.5 125 72.8
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.9e-43 179.5 125 72.8
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 2.4e-43 179.1 125 75.2
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.4e-43 179.1 106 88.7
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.2e-43 178.7 106 87.7
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 4.2e-43 178.3 137 65.0
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 5.4e-43 177.9 128 71.1
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 7.1e-43 177.6 125 73.6
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 9.3e-43 177.2 125 70.4
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 9.3e-43 177.2 106 86.8
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.2e-42 176.8 128 72.7
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 1.6e-42 176.4 128 71.1
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 1.6e-42 176.4 125 72.0
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 2.1e-42 176.0 125 69.6
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.1e-42 176.0 117 76.9
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 2.1e-42 176.0 125 69.6
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 2.7e-42 175.6 125 72.0
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 3.5e-42 175.3 120 75.8
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 4.6e-42 174.9 125 70.4
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 4.6e-42 174.9 125 73.6
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 6.0e-42 174.5 136 65.4
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 6.0e-42 174.5 136 65.4
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 6.0e-42 174.5 125 69.6
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 7.8e-42 174.1 123 69.9
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 1.0e-41 173.7 128 66.4
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 3.0e-41 172.2 125 74.4
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 6.6e-41 171.0 125 69.6
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.1e-40 170.2 107 81.3
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 1.9e-40 169.5 125 73.6
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 2.5e-40 169.1 133 64.7
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.3e-40 168.7 107 80.4
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 3.3e-40 168.7 140 65.7
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 7.3e-40 167.5 125 70.4
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 3.6e-39 165.2 106 79.2
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 8.1e-39 164.1 125 70.4
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 1.4e-38 163.3 125 65.6
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.4e-38 163.3 107 77.6
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.1e-38 162.2 133 68.4
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 4.0e-38 161.8 125 70.4
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 6.9e-38 161.0 106 78.3
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.2e-37 160.2 125 65.6
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 5.8e-37 157.9 106 76.4
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 2.9e-36 155.6 125 63.2
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 6.4e-36 154.5 140 59.3
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 7.1e-35 151.0 127 61.4
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 3.5e-34 148.7 134 61.2
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 3.5e-34 148.7 134 61.2
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.9e-32 142.9 107 71.0
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 7.6e-29 131.0 128 55.5
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 3.8e-28 128.6 128 54.7
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 4.9e-28 128.3 125 56.0
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 3.2e-27 125.6 123 55.3
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 4.2e-27 125.2 127 54.3
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 8.7e-25 117.5 129 49.6
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 1.1e-24 117.1 126 50.8
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 3.3e-24 115.5 128 49.2
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 2.5e-11 72.8 164 32.9
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 7.2e-11 71.2 48 66.7
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 2.7e-10 69.3 57 66.7


User provided reference genes

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