Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.0e-94 348.6 185 100.0
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.7e-89 332.8 180 97.8
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.8e-87 323.9 180 96.7
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.1e-77 293.5 190 84.7
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.1e-77 293.5 190 84.7
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 8.4e-73 277.3 185 81.6
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.4e-67 259.2 180 80.6
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 2.1e-63 246.1 184 75.0
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 8.7e-62 240.7 175 77.7
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.5e-61 240.0 180 75.0
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 7.4e-61 237.7 183 74.9
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 9.6e-61 237.3 178 75.8
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.6e-60 236.5 180 74.4
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 2.1e-60 236.1 180 76.1
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 6.2e-60 234.6 180 73.9
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 8.1e-60 234.2 181 73.5
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.8e-59 233.0 176 73.3
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 4.0e-59 231.9 175 74.3
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 2.0e-58 229.6 186 69.4
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 2.6e-58 229.2 176 71.6
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 2.6e-58 229.2 175 71.4
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 5.8e-58 228.0 180 70.6
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 5.8e-58 228.0 176 72.2
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 5.8e-58 228.0 181 72.4
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 7.6e-58 227.6 182 70.3
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 1.0e-57 227.3 187 70.6
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.0e-57 227.3 176 72.2
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.3e-57 226.9 175 71.4
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 1.7e-57 226.5 175 73.1
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.7e-57 226.5 175 73.1
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 1.7e-57 226.5 175 73.1
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.2e-57 226.1 172 74.4
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 3.8e-57 225.3 192 64.6
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.9e-57 224.9 178 70.2
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 5.5e-56 221.5 180 70.0
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.6e-55 219.9 176 69.9
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.7e-55 219.2 204 62.7
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 3.5e-55 218.8 180 68.9
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 4.6e-55 218.4 175 70.3
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 6.0e-55 218.0 175 69.7
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 7.9e-55 217.6 177 68.4
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.0e-54 217.2 199 61.8
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.3e-54 216.9 194 69.1
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.3e-54 216.9 175 66.9
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.8e-54 216.5 180 67.2
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.8e-54 216.5 180 67.2
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 2.3e-54 216.1 175 66.9
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 2.3e-54 216.1 188 63.3
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.0e-54 215.7 175 68.0
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.0e-54 215.7 175 68.0
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.0e-54 215.7 175 68.0
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 3.9e-54 215.3 142 83.8
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 3.9e-54 215.3 178 68.0
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 6.7e-54 214.5 176 67.6
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 8.7e-54 214.2 179 67.6
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.1e-53 213.8 174 66.7
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 1.1e-53 213.8 182 64.3
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 1.9e-53 213.0 174 66.1
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 1.9e-53 213.0 180 68.3
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 1.9e-53 213.0 180 68.3
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.9e-53 213.0 178 67.4
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.9e-53 213.0 181 68.0
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.5e-53 212.6 175 68.6
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 3.3e-53 212.2 192 62.5
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 7.4e-53 211.1 180 64.4
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.3e-52 210.3 180 67.8
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.3e-52 210.3 178 64.6
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.3e-52 210.3 132 82.6
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.3e-52 210.3 171 66.7
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.6e-52 209.9 188 65.4
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.6e-52 209.9 176 65.3
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 2.1e-52 209.5 179 63.7
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 2.1e-52 209.5 189 63.0
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 2.8e-52 209.1 177 65.5
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 2.8e-52 209.1 179 63.7
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 3.7e-52 208.8 176 65.9
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 4.8e-52 208.4 181 66.3
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.1e-51 207.2 174 65.5
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.4e-51 206.8 201 61.7
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.8e-51 206.5 174 64.4
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 1.8e-51 206.5 174 64.4
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 2.4e-51 206.1 176 65.3
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.3e-51 204.9 176 64.8
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 5.3e-51 204.9 176 66.5
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 9.0e-51 204.1 176 65.3
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.5e-50 203.4 174 63.8
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 2.0e-50 203.0 176 64.8
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 3.4e-50 202.2 175 64.0
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 4.5e-50 201.8 193 59.1
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 5.9e-50 201.4 187 62.0
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 5.9e-50 201.4 175 63.4
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 1.0e-49 200.7 182 63.2
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.3e-49 200.3 176 64.8
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 5.0e-49 198.4 178 62.4
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 8.5e-49 197.6 154 73.4
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 1.9e-48 196.4 201 54.7
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.5e-48 194.9 177 63.8
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.5e-48 194.9 177 63.8
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 7.2e-48 194.5 184 60.9
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.2e-47 193.7 179 63.7
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.2e-47 193.7 157 73.2
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 2.1e-47 193.0 185 62.2
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 4.6e-47 191.8 179 63.1
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 1.8e-46 189.9 137 72.3
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 3.9e-46 188.7 178 57.3
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 5.1e-46 188.3 174 60.9
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 5.1e-46 188.3 174 60.9
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 2.5e-45 186.0 175 61.7
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 4.3e-45 185.3 177 60.5
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 4.3e-45 185.3 177 60.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 5.7e-45 184.9 192 57.3
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 6.3e-44 181.4 120 75.8
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 4.1e-43 178.7 155 67.7
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 9.1e-43 177.6 173 59.5
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 4.2e-40 168.7 102 82.4
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 6.1e-39 164.9 135 64.4
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 7.9e-39 164.5 177 58.2
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 3.7e-36 155.6 188 47.9
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 6.3e-36 154.8 146 62.3
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.1e-35 154.1 91 84.6
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.7e-33 146.7 188 45.7
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 1.1e-32 144.1 115 64.3
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 7.2e-32 141.4 102 69.6
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.0e-29 133.3 112 61.6
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 9.7e-29 131.0 103 63.1
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 3.7e-28 129.0 101 66.3
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 8.2e-28 127.9 101 65.3
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.1e-27 127.5 125 64.8
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 3.1e-27 125.9 126 54.8
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 7.0e-27 124.8 85 75.3
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 1.6e-26 123.6 120 54.2
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 2.6e-26 122.9 102 64.7
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 7.7e-26 121.3 103 63.1
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 3.2e-24 115.9 126 55.6
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 6.1e-23 111.7 110 51.8
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.8e-22 110.2 103 55.3
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.0e-22 109.0 88 71.6
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 6.7e-22 108.2 115 53.9
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 6.7e-22 108.2 103 57.3
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.2e-21 107.5 175 43.4
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 1.2e-21 107.5 110 51.8
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 4.4e-21 105.5 98 55.1
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 3.7e-20 102.4 82 61.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 7.0e-19 98.2 73 64.4
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.3e-17 94.0 64 76.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 6.5e-17 91.7 67 71.6
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.5e-16 90.5 110 42.7
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 1.9e-16 90.1 98 44.9
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 3.2e-16 89.4 101 49.5
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 7.2e-16 88.2 94 51.1
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.6e-15 87.0 124 46.0
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.8e-11 73.6 87 39.1
CAN.G1581.1 Capsicum annuum HOM05D004626 ORTHO05D005185 5.9e-10 68.6 56 71.4
Nitab4.5_0000104g0020 Nicotiana tabacum HOM05D034732 ORTHO05D285139 4.7e-07 58.9 53 64.2


User provided reference genes

Program Settings