Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 7.2e-49 196.8 93 100.0
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 1.5e-17 92.8 50 76.0
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 9.6e-17 90.1 47 85.1
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 1.6e-16 89.4 47 85.1
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 3.6e-16 88.2 47 80.9
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 6.2e-16 87.4 47 83.0
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 6.2e-16 87.4 47 83.0
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 1.4e-15 86.3 47 76.6
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 1.8e-15 85.9 45 80.0
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 2.4e-15 85.5 44 84.1
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 4.0e-15 84.7 47 76.6
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 5.2e-15 84.3 47 76.6
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 1.5e-14 82.8 47 70.2
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 1.5e-14 82.8 46 78.3
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 2.6e-14 82.0 45 71.1
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 5.8e-14 80.9 47 72.3
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 9.9e-14 80.1 45 73.3
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 1.3e-13 79.7 47 74.5
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 1.7e-13 79.3 45 75.6
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 2.9e-13 78.6 44 72.7
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 2.9e-13 78.6 47 76.6
Gohir.A09G118500 Gossypium hirsutum HOM05D008360 ORTHO05D010532 1.1e-12 76.6 47 76.6
Gohir.D09G115400 Gossypium hirsutum HOM05D008360 ORTHO05D010532 1.1e-12 76.6 47 76.6
Gorai.006G133100 Gossypium raimondii HOM05D008360 ORTHO05D010532 1.1e-12 76.6 47 76.6
arahy.Tifrunner.gnm1.ann1.LHUB84 Arachis hypogaea HOM05D008360 ORTHO05D010532 1.4e-12 76.3 41 75.6
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 1.9e-12 75.9 41 78.0
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 2.4e-12 75.5 44 70.5
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 2.4e-12 75.5 45 64.4
Potri.006G041600 Populus trichocarpa HOM05D008360 ORTHO05D010532 2.4e-12 75.5 47 68.1
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 4.2e-12 74.7 45 64.4
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 9.3e-12 73.6 43 69.8
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 1.6e-11 72.8 45 64.4
CARHR167260 Cardamine hirsuta HOM05D008360 ORTHO05D010532 2.1e-11 72.4 47 66.0
Lj1g0003695 Lotus japonicus HOM05D008360 ORTHO05D010532 2.1e-11 72.4 39 74.4
Medtr7g090260 Medicago truncatula HOM05D008360 ORTHO05D010532 2.1e-11 72.4 40 77.5
Aa31LG10G11990 Aethionema arabicum HOM05D008360 ORTHO05D010532 6.0e-11 70.9 47 66.0
Carub.0005s2387 Capsella rubella HOM05D008360 ORTHO05D010532 6.0e-11 70.9 47 61.7
A09p49990 Brassica napus HOM05D008360 ORTHO05D010532 7.8e-11 70.5 47 63.8
C08p32400 Brassica napus HOM05D008360 ORTHO05D010532 7.8e-11 70.5 47 63.8
BolC8t50854H Brassica oleracea HOM05D008360 ORTHO05D010532 7.8e-11 70.5 47 63.8
BraA09t40449Z Brassica rapa HOM05D008360 ORTHO05D010532 7.8e-11 70.5 47 63.8
AL5G38550 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 1.0e-10 70.1 47 61.7
AT3G57062 Arabidopsis thaliana HOM05D008360 ORTHO05D010532 1.0e-10 70.1 47 61.7
Sabra06G0028300 Salix brachista HOM05D008360 ORTHO05D010532 2.3e-10 68.9 44 63.6
THA.LOC104824413 Tarenaya hassleriana HOM05D008360 ORTHO05D010532 2.3e-10 68.9 47 59.6
Thhalv10006358m.g Eutrema salsugineum HOM05D008360 ORTHO05D010532 5.1e-10 67.8 47 59.6
Actinidia17687 Actinidia chinensis HOM05D008360 ORTHO05D010532 6.6e-10 67.4 37 78.4
Hma1.2p1_1048F.1_g251680 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 8.7e-10 67.0 47 66.0
Lalb_Chr20g0110161 Lupinus albus HOM05D008360 ORTHO05D010532 1.9e-09 65.9 45 71.1
PSO384G3670 Papaver somniferum HOM05D008360 ORTHO05D010532 1.9e-09 65.9 47 59.6
BcaC02g12894 Brassica carinata HOM05D008360 ORTHO05D010532 7.3e-09 63.9 47 59.6
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.3e-08 63.2 35 68.6
Lalb_Chr25g0286871 Lupinus albus HOM05D008360 ORTHO05D010532 1.6e-08 62.8 40 65.0
AL4G39310 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 6.2e-08 60.8 47 53.2
Carub.0004s2362 Capsella rubella HOM05D008360 ORTHO05D010532 5.3e-07 57.8 47 53.2
Os03g0810500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 2.6e-06 55.5 49 51.0


User provided reference genes

Program Settings