Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1307.7 642 100.0
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1283.9 642 97.8
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 0.0e+00 1204.5 642 90.7
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 0.0e+00 1202.2 643 90.7
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 0.0e+00 1187.9 664 88.1
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 0.0e+00 1186.4 643 89.4
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 0.0e+00 1162.1 671 85.4
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 3.1e-276 954.9 637 74.1
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 2.9e-274 948.3 644 72.0
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 2.7e-272 941.8 656 71.3
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.2e-270 936.4 636 70.9
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 2.2e-269 932.2 642 69.9
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 1.0e-263 913.3 641 69.4
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 2.2e-261 905.6 642 68.4
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 4.9e-261 904.4 643 69.2
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 1.6e-259 899.4 650 68.3
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 3.5e-259 898.3 636 69.5
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 7.8e-259 897.1 642 69.5
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.7e-258 896.0 662 67.4
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.7e-258 896.0 662 67.4
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 9.5e-257 890.2 640 67.8
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 1.2e-254 883.2 644 68.3
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 1.5e-254 882.9 637 66.6
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 4.4e-254 881.3 636 68.6
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 1.3e-253 879.8 657 65.9
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 2.9e-253 878.6 639 68.2
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 6.4e-253 877.5 646 66.9
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 2.4e-252 875.5 644 65.8
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 5.4e-252 874.4 635 66.9
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 7.0e-252 874.0 639 67.9
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.7e-251 872.1 639 66.5
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 4.6e-251 871.3 630 68.3
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 3.9e-250 868.2 641 66.8
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 1.5e-249 866.3 654 65.1
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 2.5e-249 865.5 644 66.3
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 5.6e-249 864.4 649 66.4
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 9.5e-249 863.6 646 65.9
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 8.1e-248 860.5 643 65.9
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.1e-247 860.1 641 66.1
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 1.4e-247 859.8 653 65.5
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.8e-247 859.4 662 64.0
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.5e-246 856.3 640 67.3
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 3.4e-246 855.1 634 67.7
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 5.8e-246 854.4 673 62.9
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 4.6e-243 844.7 643 66.4
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.6e-243 844.7 655 64.0
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 6.0e-243 844.3 655 64.0
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 3.0e-242 842.0 641 66.1
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 2.5e-241 839.0 645 65.6
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 4.3e-241 838.2 642 65.6
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 6.2e-240 834.3 644 64.1
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 1.1e-239 833.6 641 65.1
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 1.8e-239 832.8 647 62.1
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 3.1e-239 832.0 653 64.0
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 4.4e-238 828.2 642 64.0
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 2.4e-236 822.4 605 65.5
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 4.1e-236 821.6 688 61.2
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 1.6e-235 819.7 640 63.4
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 1.3e-234 816.6 645 63.4
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 2.3e-234 815.8 644 63.4
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 9.6e-233 810.4 636 63.2
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 3.6e-232 808.5 647 64.8
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 1.1e-231 807.0 642 62.1
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 1.8e-231 806.2 657 61.6
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 6.8e-231 804.3 639 63.2
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.5e-230 803.1 647 64.3
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 4.4e-230 801.6 642 62.9
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 4.4e-230 801.6 633 63.0
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 5.8e-230 801.2 639 63.2
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 1.3e-229 800.0 640 63.3
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 1.1e-228 797.0 645 62.5
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 1.9e-228 796.2 633 62.7
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 3.5e-227 792.0 637 62.8
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.3e-226 790.0 633 63.0
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 1.9e-225 786.2 636 62.1
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 2.5e-225 785.8 632 63.0
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 3.3e-225 785.4 647 61.2
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 2.8e-224 782.3 654 59.2
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 4.0e-223 778.5 657 60.1
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 6.9e-223 777.7 640 60.5
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 3.4e-222 775.4 610 63.8
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 9.9e-222 773.9 651 62.2
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 1.7e-221 773.1 645 61.4
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 3.8e-221 771.9 582 65.3
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 7.9e-211 737.6 635 57.5
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 2.5e-209 732.6 634 58.8
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 4.8e-208 728.4 490 72.4
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 1.4e-204 716.8 532 66.5
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 1.2e-203 713.8 644 57.8
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 9.7e-193 677.6 454 71.1
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 2.6e-182 642.9 638 53.3
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 1.4e-178 630.6 619 52.3
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 2.0e-177 626.7 624 53.5
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 4.2e-156 555.8 617 49.1
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 4.2e-156 555.8 503 57.1
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 1.6e-150 537.3 427 62.3
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 1.9e-148 530.4 358 70.4
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 2.7e-134 483.4 336 69.9
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 4.6e-134 482.6 330 70.3
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 3.2e-127 459.9 466 51.9
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 4.2e-103 379.8 414 51.2
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 5.3e-74 283.1 266 55.3
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 2.4e-66 257.7 201 63.7
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 5.3e-66 256.5 191 64.4
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 2.9e-64 250.8 175 65.1
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 2.4e-50 204.5 163 60.7
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 1.7e-48 198.4 129 70.5
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 2.9e-48 197.6 150 65.3
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 1.5e-47 195.3 117 82.1
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 1.4e-45 188.7 190 52.6
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 2.3e-45 188.0 122 72.1
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 1.4e-34 152.1 177 45.8
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 1.0e-32 146.0 111 64.0
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 7.3e-31 139.8 74 83.8
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 4.9e-27 127.1 64 90.6
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 2.0e-20 105.1 84 58.3


User provided reference genes

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