Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.6e-96 354.0 173 100.0
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 4.2e-82 308.1 169 88.2
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 8.7e-72 273.9 169 76.9
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.5e-71 273.1 169 77.5
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.3e-70 270.0 168 76.8
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 3.1e-69 265.4 174 75.3
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 4.0e-69 265.0 168 75.0
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 4.0e-69 265.0 168 76.2
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 4.0e-69 265.0 168 76.2
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.9e-69 264.2 176 73.3
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.5e-68 263.1 174 73.6
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.5e-68 263.1 169 75.7
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 2.6e-68 262.3 172 76.2
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.6e-68 262.3 169 75.1
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 4.5e-68 261.5 169 74.6
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.7e-67 259.6 169 74.0
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 1.7e-67 259.6 168 76.2
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.1e-66 256.9 169 74.0
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 2.4e-66 255.8 168 73.8
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 3.2e-66 255.4 168 73.8
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 5.4e-66 254.6 169 74.6
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 5.4e-66 254.6 168 72.6
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 7.1e-66 254.2 168 73.2
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 7.1e-66 254.2 170 72.9
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 9.3e-66 253.8 169 72.8
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 9.3e-66 253.8 168 72.0
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.6e-65 253.1 171 71.9
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 2.1e-65 252.7 168 72.0
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 3.5e-65 251.9 169 74.0
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 7.9e-65 250.8 168 72.0
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.0e-64 250.4 168 72.0
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 1.3e-64 250.0 168 73.8
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.8e-64 249.6 168 70.8
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 3.0e-64 248.8 168 72.0
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 3.9e-64 248.4 180 67.2
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 6.7e-64 247.7 168 73.2
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 3.3e-63 245.4 168 70.2
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 3.3e-63 245.4 168 70.2
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 5.6e-63 244.6 171 71.9
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 5.6e-63 244.6 171 73.7
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 7.4e-63 244.2 170 72.4
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 9.6e-63 243.8 169 71.0
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.6e-62 243.0 167 70.7
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 4.8e-62 241.5 168 70.2
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 6.2e-62 241.1 169 69.8
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.4e-61 240.0 168 71.4
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.8e-61 239.6 169 70.4
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 1.8e-61 239.6 168 67.9
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 2.4e-61 239.2 168 71.4
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 3.1e-61 238.8 170 71.8
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 5.3e-61 238.0 167 70.1
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 1.2e-60 236.9 169 71.6
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 2.0e-60 236.1 169 72.8
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 2.6e-60 235.7 167 69.5
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 2.6e-60 235.7 170 70.6
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 2.6e-60 235.7 169 69.8
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 4.5e-60 235.0 168 70.2
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 4.5e-60 235.0 170 68.2
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.8e-60 234.6 170 70.0
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.8e-60 234.6 170 70.0
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 5.8e-60 234.6 168 70.2
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 5.8e-60 234.6 169 71.0
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 5.8e-60 234.6 169 69.2
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 7.6e-60 234.2 170 68.2
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 7.6e-60 234.2 171 70.2
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.0e-59 233.8 171 70.2
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.0e-59 233.8 167 67.7
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.7e-59 233.0 170 67.6
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 1.7e-59 233.0 170 67.6
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.7e-59 233.0 170 67.6
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.2e-59 232.6 169 69.8
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 2.9e-59 232.3 169 70.4
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.9e-59 232.3 170 69.4
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 2.9e-59 232.3 169 71.0
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 3.8e-59 231.9 168 71.4
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.1e-58 230.3 170 70.6
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.2e-58 228.8 171 69.0
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 5.5e-58 228.0 168 66.1
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 3.5e-57 225.3 171 67.8
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 4.6e-57 224.9 171 70.8
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 7.9e-57 224.2 168 63.7
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.0e-56 223.8 167 66.5
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.3e-56 222.6 169 67.5
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 3.0e-56 222.2 214 55.1
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 3.0e-56 222.2 214 55.1
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.0e-56 222.2 169 68.0
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 3.9e-56 221.9 171 67.3
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 2.5e-55 219.2 169 67.5
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 3.3e-55 218.8 169 68.0
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 3.3e-55 218.8 168 65.5
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 4.3e-55 218.4 169 66.9
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 4.3e-55 218.4 169 66.9
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 9.6e-55 217.2 168 65.5
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 2.1e-54 216.1 168 66.1
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 2.8e-54 215.7 159 70.4
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 3.7e-54 215.3 168 67.3
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.4e-53 213.4 169 64.5
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.4e-53 213.4 168 66.7
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 1.4e-53 213.4 169 65.7
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 3.1e-53 212.2 140 73.6
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.3e-53 211.5 169 65.1
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 6.9e-53 211.1 168 64.9
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.5e-52 209.9 170 65.9
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 2.2e-51 206.1 168 59.5
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 2.9e-51 205.7 168 64.3
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 5.0e-51 204.9 168 64.3
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 5.0e-51 204.9 168 64.3
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 6.5e-51 204.5 168 64.3
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 5.5e-50 201.4 168 63.7
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 9.3e-50 200.7 169 63.3
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 9.3e-50 200.7 169 63.3
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.2e-49 200.3 170 62.9
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 4.6e-49 198.4 168 61.9
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 4.6e-49 198.4 168 61.9
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 4.6e-49 198.4 168 61.9
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 3.0e-48 195.7 168 61.3
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.5e-47 193.4 168 60.1
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 5.0e-43 178.3 136 69.1
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 5.5e-42 174.9 130 66.9
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 9.4e-42 174.1 169 56.2
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.4e-40 170.2 156 56.4
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.3e-40 169.5 170 54.7
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 3.9e-40 168.7 174 54.0
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 3.9e-40 168.7 174 54.0
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 3.9e-40 168.7 174 54.0
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 5.1e-40 168.3 173 51.4
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 8.8e-40 167.5 167 49.1
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.5e-39 166.0 168 51.8
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 1.3e-38 163.7 155 52.9
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.2e-38 162.9 141 62.4
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 4.1e-37 158.7 171 52.0
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 5.3e-37 158.3 170 51.2
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.7e-35 153.3 171 48.5
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 3.0e-32 142.5 170 44.7
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 1.4e-29 133.7 98 66.3
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.8e-29 133.3 167 43.1
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 4.1e-29 132.1 115 63.5
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 3.8e-27 125.6 124 54.0
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 1.5e-23 113.6 69 76.8
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 5.7e-23 111.7 205 33.2
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 2.0e-20 103.2 167 37.7
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.7e-20 101.3 98 51.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 6.5e-19 98.2 171 33.9
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.5e-18 96.3 60 73.3
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 3.2e-18 95.9 134 47.8
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 1.1e-13 80.9 73 65.8
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 4.1e-13 79.0 60 60.0
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 1.0e-08 64.3 171 26.9


User provided reference genes

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