Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.9e-42 174.9 92 100.0
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.1e-28 127.9 87 79.3
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.6e-27 125.9 86 77.9
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 7.7e-27 123.6 87 75.9
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.0e-19 99.0 71 77.5
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 2.0e-19 99.0 95 63.2
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 4.2e-17 91.3 95 57.9
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 7.2e-17 90.5 70 71.4
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.8e-15 85.9 90 54.4
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 4.0e-15 84.7 89 50.6
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 6.8e-15 84.0 90 54.4
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 9.8e-14 80.1 76 57.9
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 9.8e-14 80.1 65 64.6
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.7e-13 79.3 86 52.3
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 2.2e-13 79.0 61 65.6
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 6.3e-13 77.4 66 60.6
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 8.3e-13 77.0 98 45.9
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.1e-12 76.6 67 55.2
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.1e-12 76.6 71 57.7
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 1.1e-12 76.6 88 53.4
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 1.8e-12 75.9 71 56.3
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.4e-12 75.5 66 60.6
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.4e-12 75.5 66 60.6
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 2.4e-12 75.5 96 50.0
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 4.1e-12 74.7 78 47.4
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 5.4e-12 74.3 69 58.0
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 5.4e-12 74.3 88 46.6
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 5.4e-12 74.3 67 59.7
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 5.4e-12 74.3 70 57.1
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 9.2e-12 73.6 101 45.5
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 9.2e-12 73.6 65 58.5
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 1.2e-11 73.2 69 55.1
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 1.2e-11 73.2 72 55.6
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.2e-11 73.2 77 54.5
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.2e-11 73.2 92 46.7
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.6e-11 72.8 84 51.2
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 1.6e-11 72.8 69 58.0
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.6e-11 72.8 69 58.0
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.6e-11 72.8 69 58.0
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.6e-11 72.8 88 48.9
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.6e-11 72.8 85 50.6
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.6e-11 72.8 71 54.9
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 2.0e-11 72.4 69 58.0
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 2.0e-11 72.4 69 58.0
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 2.0e-11 72.4 63 57.1
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 2.0e-11 72.4 64 60.9
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 2.7e-11 72.0 69 56.5
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 2.7e-11 72.0 88 52.3
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 2.7e-11 72.0 66 57.6
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.7e-11 72.0 69 53.6
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 3.5e-11 71.6 77 54.5
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 3.5e-11 71.6 67 56.7
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 4.5e-11 71.2 65 53.8
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 5.9e-11 70.9 64 59.4
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 5.9e-11 70.9 72 55.6
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 5.9e-11 70.9 67 56.7
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 5.9e-11 70.9 81 45.7
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 7.8e-11 70.5 101 46.5
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 7.8e-11 70.5 67 58.2
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.0e-10 70.1 66 57.6
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.3e-10 69.7 69 55.1
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.3e-10 69.7 77 50.6
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 1.3e-10 69.7 65 53.8
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.3e-10 69.7 71 54.9
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.3e-10 69.7 62 58.1
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.3e-10 69.7 62 58.1
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 1.7e-10 69.3 66 53.0
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.7e-10 69.3 82 47.6
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 2.3e-10 68.9 86 50.0
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.3e-10 68.9 69 52.2
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 2.9e-10 68.6 69 52.2
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.0e-10 67.8 84 47.6
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.0e-10 67.8 68 54.4
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.0e-10 67.8 68 54.4
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.0e-10 67.8 68 54.4
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 5.0e-10 67.8 66 53.0
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 6.6e-10 67.4 69 50.7
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 6.6e-10 67.4 67 55.2
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 6.6e-10 67.4 97 45.4
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 6.6e-10 67.4 84 46.4
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 6.6e-10 67.4 84 46.4
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 8.6e-10 67.0 77 45.5
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 8.6e-10 67.0 66 53.0
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 8.6e-10 67.0 67 55.2
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 8.6e-10 67.0 66 56.1
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 8.6e-10 67.0 68 50.0
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.1e-09 66.6 66 51.5
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.1e-09 66.6 68 51.5
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.5e-09 66.2 66 57.6
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.9e-09 65.9 66 51.5
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.9e-09 65.9 68 52.9
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 1.9e-09 65.9 94 42.6
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.5e-09 65.5 84 46.4
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.5e-09 65.5 74 47.3
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 3.3e-09 65.1 84 44.0
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 4.3e-09 64.7 65 53.8
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 4.3e-09 64.7 70 50.0
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 5.6e-09 64.3 66 50.0
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 5.6e-09 64.3 63 52.4
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 7.3e-09 63.9 66 51.5
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 3.6e-08 61.6 62 51.6
Peaxi162Scf00151g00817 Petunia axillaris HOM05D005286 ORTHO05D006348 3.6e-08 61.6 44 70.5
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.6e-08 61.6 62 50.0
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 4.7e-08 61.2 63 54.0
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 8.0e-08 60.5 72 47.2
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.8e-07 59.3 62 50.0
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 6.8e-07 57.4 77 42.9
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 8.9e-07 57.0 68 45.6
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 8.9e-07 57.0 82 42.7
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 1.5e-06 56.2 62 45.2
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 1.5e-06 56.2 78 41.0
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 9.8e-06 53.5 78 39.7


User provided reference genes

Program Settings