Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 3.4e-239 831.2 420 100.0
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.9e-197 692.6 372 95.2
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 9.2e-184 647.1 414 81.2
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 9.5e-181 637.1 404 82.7
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 3.4e-178 628.6 404 80.9
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 2.0e-167 592.8 407 79.1
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 4.9e-161 571.6 298 91.9
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 6.9e-139 498.0 410 63.4
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.5e-138 496.9 400 64.2
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 2.9e-137 492.7 401 64.8
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 4.9e-137 491.9 403 62.8
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 6.4e-137 491.5 406 64.3
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 6.4e-137 491.5 401 66.1
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 3.5e-135 485.7 398 63.6
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 4.6e-135 485.3 412 61.2
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 2.3e-134 483.0 399 62.4
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 6.7e-134 481.5 397 63.5
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 3.3e-133 479.2 399 62.9
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 7.4e-133 478.0 401 61.8
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.6e-132 476.9 401 61.6
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 3.7e-132 475.7 392 62.5
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 4.8e-132 475.3 392 62.5
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 1.1e-131 474.2 408 60.0
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.2e-130 470.7 371 64.7
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 2.6e-130 469.5 375 63.5
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 4.5e-130 468.8 387 62.0
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.7e-129 466.8 409 60.9
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 4.9e-129 465.3 402 61.9
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.1e-128 464.2 402 59.7
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 3.5e-127 459.1 424 57.5
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 1.0e-126 457.6 387 63.0
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.3e-126 457.2 397 61.0
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.8e-126 456.8 423 59.1
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 3.9e-126 455.7 379 61.7
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 7.4e-125 451.4 396 59.8
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 3.7e-124 449.1 360 62.8
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 1.7e-121 440.3 398 57.0
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.7e-121 440.3 395 58.2
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 2.1e-119 433.3 382 57.9
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 3.0e-118 429.5 419 54.7
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 5.1e-118 428.7 388 57.5
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 1.3e-116 424.1 391 56.8
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 2.8e-116 422.9 406 52.7
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 3.1e-115 419.5 361 59.8
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 3.4e-114 416.0 395 55.7
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 3.4e-114 416.0 388 56.7
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 1.7e-113 413.7 396 56.6
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 1.7e-113 413.7 382 55.5
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 1.7e-113 413.7 383 55.4
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 2.1e-111 406.8 377 57.3
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 3.6e-111 406.0 378 54.8
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 3.6e-111 406.0 395 55.4
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 3.9e-110 402.5 383 53.5
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 6.7e-110 401.7 372 57.0
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 3.3e-109 399.4 349 60.5
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.3e-109 399.1 351 58.7
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 5.7e-109 398.7 392 52.3
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 1.3e-108 397.5 375 56.0
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 6.3e-108 395.2 391 54.7
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 1.1e-107 394.4 445 50.8
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.8e-107 393.7 322 63.7
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 2.4e-107 393.3 413 52.3
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 3.1e-107 392.9 391 53.2
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 3.1e-107 392.9 392 53.6
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 4.1e-107 392.5 367 57.8
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 2.0e-106 390.2 390 52.1
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 2.6e-106 389.8 375 55.7
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 3.4e-106 389.4 397 55.2
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.3e-105 387.5 419 51.1
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 1.9e-104 383.6 391 51.9
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 4.2e-104 382.5 409 49.1
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.6e-103 380.6 405 49.6
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.1e-103 380.2 272 65.8
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 6.1e-103 378.6 395 52.7
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.0e-102 377.9 377 54.4
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 2.3e-102 376.7 411 49.4
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 2.3e-102 376.7 397 54.9
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 8.8e-102 374.8 410 49.5
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 2.6e-101 373.2 409 49.6
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 2.6e-101 373.2 252 71.8
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 4.4e-101 372.5 417 48.4
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 7.4e-101 371.7 412 48.5
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 2.2e-100 370.2 403 49.9
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 1.4e-99 367.5 411 49.1
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 4.1e-99 365.9 408 48.5
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 4.5e-98 362.5 403 50.9
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 1.7e-97 360.5 365 54.2
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 1.4e-96 357.5 373 52.5
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.9e-96 357.1 383 53.5
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 2.5e-96 356.7 417 46.3
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 4.2e-96 355.9 375 49.6
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 4.7e-95 352.4 307 61.2
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 1.8e-94 350.5 369 50.1
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 2.0e-93 347.1 392 48.5
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 2.2e-92 343.6 408 46.3
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 4.8e-92 342.4 233 68.7
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.6e-90 336.7 403 47.9
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 3.5e-90 336.3 471 42.7
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 3.6e-87 326.2 360 48.9
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 3.6e-87 326.2 258 62.0
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 1.4e-86 324.3 386 48.2
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.8e-86 323.9 375 50.1
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 5.3e-83 312.4 367 48.5
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 1.6e-82 310.8 386 45.6
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.9e-80 303.9 407 45.0
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 3.2e-80 303.1 259 55.6
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 1.2e-79 301.2 402 44.0
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 4.7e-79 299.3 373 44.2
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 6.8e-78 295.4 320 47.8
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 8.3e-76 288.5 392 42.9
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 9.1e-75 285.0 274 51.5
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 1.2e-74 284.6 308 48.1
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 5.9e-74 282.3 280 49.3
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 2.6e-69 266.9 312 48.4
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 2.7e-66 256.9 188 66.5
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.9e-64 250.8 356 41.3
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 8.0e-63 245.4 281 44.5
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.0e-61 240.7 181 61.3
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 1.7e-60 237.7 245 56.3
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.3e-57 227.3 183 57.9
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 8.6e-57 225.3 178 59.6
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 5.1e-49 199.5 239 52.3
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 3.6e-47 193.4 253 47.4
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 1.7e-44 184.5 223 46.6
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 4.3e-40 169.9 143 56.6
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 1.6e-34 151.4 112 63.4
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 2.1e-31 141.0 184 52.2
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 5.8e-29 132.9 100 60.0
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 7.6e-29 132.5 100 61.0
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 8.4e-28 129.0 100 61.0
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 4.2e-27 126.7 101 57.4
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.6e-26 124.8 111 56.8
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.9e-25 120.2 101 52.5
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 5.1e-25 119.8 108 56.5
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.3e-24 117.1 94 64.9
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 9.6e-24 115.5 89 61.8
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 6.2e-23 112.8 198 40.4
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 2.0e-21 107.8 77 64.9
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 9.6e-16 89.0 150 48.7
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 3.1e-14 84.0 145 48.3
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 9.0e-14 82.4 85 42.4
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 1.0e-09 68.9 141 41.8
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 1.8e-06 58.2 42 64.3


User provided reference genes

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