Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 5.0e-109 397.9 217 100.0
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 2.9e-101 372.1 217 91.2
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 3.1e-82 308.9 225 78.2
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 9.8e-81 303.9 228 78.1
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 3.7e-80 302.0 227 77.1
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 3.0e-77 292.4 228 75.9
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 2.9e-64 249.2 200 70.5
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 7.8e-62 241.1 207 62.3
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 5.8e-57 224.9 197 64.0
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 1.7e-56 223.4 218 57.3
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 1.4e-55 220.3 200 59.0
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 1.9e-55 219.9 221 56.6
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 1.6e-54 216.9 202 58.9
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 2.7e-54 216.1 228 53.9
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 2.7e-54 216.1 218 54.1
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 3.0e-53 212.6 218 56.9
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 1.9e-52 209.9 211 54.0
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 1.9e-52 209.9 200 58.5
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 9.6e-52 207.6 217 54.4
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 1.6e-51 206.8 198 57.1
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 2.1e-51 206.5 217 54.4
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 1.1e-50 204.1 223 53.8
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 2.4e-50 203.0 203 56.2
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 3.1e-50 202.6 194 55.7
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 4.0e-50 202.2 196 55.1
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 5.3e-50 201.8 231 51.5
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 9.0e-50 201.1 205 53.7
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 1.2e-49 200.7 225 52.4
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 2.6e-49 199.5 221 52.9
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 2.6e-49 199.5 216 51.4
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 2.6e-49 199.5 201 55.2
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 7.6e-49 198.0 213 52.6
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 9.9e-49 197.6 222 51.8
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 1.3e-48 197.2 205 53.7
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 1.3e-48 197.2 217 50.2
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 1.7e-48 196.8 211 53.6
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 2.2e-48 196.4 215 50.2
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 6.4e-48 194.9 204 53.4
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 8.4e-48 194.5 197 53.8
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 8.4e-48 194.5 198 56.1
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 1.1e-47 194.1 314 42.7
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 1.4e-47 193.7 206 52.4
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 1.4e-47 193.7 206 52.4
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 1.4e-47 193.7 221 50.2
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 2.4e-47 193.0 199 54.3
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 3.2e-47 192.6 206 51.9
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 7.1e-47 191.4 170 58.8
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 7.1e-47 191.4 197 52.3
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 7.1e-47 191.4 215 49.3
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 9.3e-47 191.0 215 49.8
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 9.3e-47 191.0 212 53.3
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 3.5e-46 189.1 215 52.6
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 3.5e-46 189.1 217 50.7
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 7.9e-46 188.0 200 52.0
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 7.9e-46 188.0 221 49.8
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 1.0e-45 187.6 226 50.4
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 3.0e-45 186.0 197 50.3
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 5.1e-45 185.3 141 68.1
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 5.1e-45 185.3 204 51.5
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 1.9e-44 183.3 210 51.9
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.9e-44 183.3 196 56.1
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.5e-44 183.0 197 55.8
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 1.3e-43 180.6 197 54.8
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 1.6e-43 180.3 199 53.8
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 4.8e-43 178.7 160 60.6
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 8.1e-43 177.9 197 48.2
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.4e-42 177.2 197 54.8
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 2.4e-42 176.4 197 54.3
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 5.3e-42 175.3 201 53.7
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 5.3e-42 175.3 212 50.5
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 2.6e-41 172.9 214 44.4
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 5.8e-41 171.8 214 43.0
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 5.8e-41 171.8 211 52.1
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 9.9e-41 171.0 194 47.4
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 1.4e-39 167.2 156 60.3
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 1.4e-39 167.2 202 48.5
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 2.7e-38 162.9 209 48.8
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 2.7e-38 162.9 160 56.2
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 4.6e-38 162.2 210 42.4
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 1.3e-37 160.6 191 46.6
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 6.7e-37 158.3 235 44.7
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 1.1e-36 157.5 226 46.5
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 5.6e-36 155.2 206 44.7
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 7.4e-36 154.8 210 41.0
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 1.3e-35 154.1 114 65.8
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 1.6e-35 153.7 209 40.7
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 2.1e-35 153.3 194 45.4
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 2.8e-35 152.9 196 40.3
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 3.8e-32 142.5 154 47.4
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 3.8e-32 142.5 154 47.4
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 4.2e-31 139.0 198 43.9
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 4.2e-31 139.0 202 43.1
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 1.8e-26 123.6 157 47.8
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 2.4e-26 123.2 93 68.8
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 9.0e-26 121.3 146 48.6
SHI12778 Sapria himalayana HOM05D006223 ORTHO05D009080 2.2e-19 100.1 174 37.4
FAN23G0832 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.9e-16 89.7 122 48.4
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 1.1e-15 87.8 140 41.4
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 1.9e-15 87.0 202 31.7
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 5.5e-15 85.5 177 38.4
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 9.4e-15 84.7 98 42.9
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 1.6e-14 84.0 99 43.4
HPP92_024909 Vanilla planifolia HOM05D006223 ORTHO05D009080 2.7e-14 83.2 76 61.8
Pp3c5_6560 Physcomitrium patens HOM05D006223 ORTHO05D009080 1.8e-13 80.5 182 34.1
CSS0023916 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 2.0e-09 67.0 53 58.5
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 2.5e-07 60.1 134 32.8
SMO145G0277 Selaginella moellendorffii HOM05D034328 ORTHO05D009080 5.5e-07 58.9 147 32.0


User provided reference genes

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