Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 4.9e-244 847.4 447 100.0
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 1.3e-140 503.8 447 67.1
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 7.8e-133 478.0 456 64.9
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 3.1e-129 466.1 427 66.7
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 5.3e-129 465.3 403 68.2
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.7e-127 460.3 257 93.4
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 8.7e-108 394.8 366 66.7
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.1e-99 367.9 201 93.5
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 3.9e-76 289.7 487 44.4
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 7.7e-72 275.4 470 42.8
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 3.7e-66 256.5 444 42.3
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 6.3e-66 255.8 318 50.9
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 4.1e-65 253.1 439 42.4
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 2.7e-64 250.4 446 42.6
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 3.5e-64 250.0 314 50.6
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 3.8e-63 246.5 332 47.3
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.1e-62 245.0 303 49.5
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.1e-62 245.0 303 49.5
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 3.2e-62 243.4 300 51.0
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 5.5e-62 242.7 283 53.4
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 9.4e-62 241.9 435 40.7
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 2.1e-61 240.7 306 49.0
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 5.2e-60 236.1 379 44.6
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 5.2e-60 236.1 448 40.2
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 8.8e-60 235.3 454 39.9
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.2e-59 235.0 300 47.7
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 1.5e-59 234.6 300 47.3
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.5e-59 234.6 477 39.8
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 4.4e-59 233.0 466 38.0
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 7.5e-59 232.3 442 39.6
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.7e-58 231.1 476 39.5
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 1.7e-58 231.1 456 40.8
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 1.1e-57 228.4 354 44.6
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.4e-57 228.0 488 39.1
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 3.1e-57 226.9 404 42.1
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 4.1e-57 226.5 283 48.8
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 7.0e-57 225.7 456 38.6
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.2e-56 224.9 302 47.4
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 2.7e-56 223.8 309 47.9
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 3.5e-56 223.4 301 45.8
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 1.7e-55 221.1 459 39.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 1.7e-55 221.1 301 47.2
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 3.8e-55 219.9 499 39.7
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 3.8e-55 219.9 444 40.1
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 1.1e-54 218.4 304 48.4
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 1.1e-54 218.4 469 38.6
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 1.5e-54 218.0 499 39.5
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 2.5e-54 217.2 327 44.0
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.5e-54 217.2 439 39.6
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 3.3e-54 216.9 435 39.1
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 9.5e-54 215.3 327 45.0
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.1e-53 214.2 477 37.7
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 4.7e-53 213.0 464 39.0
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 6.1e-53 212.6 422 38.2
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.8e-52 211.1 446 39.9
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 6.8e-52 209.1 311 45.3
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 8.9e-52 208.8 383 42.3
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 8.9e-52 208.8 488 38.7
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 8.9e-52 208.8 284 46.5
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 1.2e-51 208.4 316 41.5
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.0e-51 207.6 330 44.2
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 5.7e-51 206.1 325 44.3
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 7.5e-51 205.7 444 39.6
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 7.5e-51 205.7 466 36.9
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 1.7e-50 204.5 383 41.0
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 2.8e-50 203.8 416 38.9
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 3.7e-50 203.4 460 39.1
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 4.9e-50 203.0 321 42.4
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 4.9e-50 203.0 321 42.4
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 4.9e-50 203.0 454 36.8
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 8.3e-50 202.2 284 44.0
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 1.1e-49 201.8 312 43.6
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.4e-49 201.4 407 39.1
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 1.8e-49 201.1 422 38.2
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 4.1e-49 199.9 404 39.4
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 4.1e-49 199.9 289 44.3
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 9.2e-49 198.7 470 38.7
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 9.2e-49 198.7 301 41.2
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.6e-48 198.0 340 42.1
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 3.5e-48 196.8 300 42.3
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 5.9e-48 196.1 385 38.4
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 1.3e-47 194.9 424 38.4
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 1.7e-47 194.5 458 36.9
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 2.3e-47 194.1 285 44.9
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.9e-47 193.7 424 38.4
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 5.0e-47 193.0 459 35.9
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 6.6e-47 192.6 395 39.2
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 6.6e-47 192.6 405 38.8
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 6.6e-47 192.6 315 45.4
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.5e-46 191.4 276 46.7
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 4.7e-45 186.4 450 38.0
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 6.1e-45 186.0 471 36.1
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.0e-43 181.0 324 39.5
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 5.8e-43 179.5 307 41.7
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 4.9e-42 176.4 412 36.4
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 1.1e-41 175.3 302 44.0
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 1.2e-37 161.8 437 34.8
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 2.8e-37 160.6 291 40.5
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 4.7e-37 159.8 317 37.9
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 3.1e-36 157.1 279 41.6
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 4.0e-36 156.8 474 34.0
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 7.5e-35 152.5 467 33.4
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 2.9e-34 150.6 279 38.0
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 2.9e-34 150.6 439 33.7
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 3.7e-34 150.2 309 38.2
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 3.7e-34 150.2 309 38.2
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 2.4e-33 147.5 290 37.9
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 3.2e-33 147.1 239 40.6
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 7.1e-33 146.0 433 33.5
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 1.2e-32 145.2 424 35.1
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 1.2e-32 145.2 424 35.1
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 5.1e-31 139.8 284 37.7
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 2.5e-30 137.5 264 36.4
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 1.2e-27 128.6 252 38.1
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 1.5e-27 128.3 286 36.7
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 2.6e-27 127.5 438 32.6
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 1.9e-25 121.3 252 35.3
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 9.2e-25 119.0 231 39.0
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 1.1e-22 112.1 128 51.6
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 7.6e-19 99.4 288 30.2
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.3e-18 98.6 248 33.9
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 2.2e-18 97.8 238 34.0
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 1.9e-17 94.7 293 31.1
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 1.1e-14 85.5 260 30.0
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 9.6e-14 82.4 274 29.2
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 3.6e-13 80.5 166 34.9
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 5.8e-11 73.2 425 24.5
TAR625G0743 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.1e-06 58.9 128 35.2


User provided reference genes

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