Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 2068.9 1053 100.0
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 2030.0 1073 97.0
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1958.3 1073 92.4
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1955.3 1073 92.2
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1954.1 1073 92.1
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1951.4 1073 92.5
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1744.9 1085 81.5
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1735.7 1080 81.7
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1718.7 1079 80.1
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1714.1 1084 80.5
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1712.6 1081 79.7
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1712.2 1082 79.9
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1711.8 1081 80.2
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1706.4 1073 79.8
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1700.6 1080 79.4
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1687.5 1090 78.2
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1684.5 1089 77.6
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1682.2 1087 78.4
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1678.7 1077 79.1
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1672.5 1101 77.2
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1671.8 1102 77.6
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1671.0 1090 77.7
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1669.8 1090 77.7
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1668.3 1090 77.8
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1667.5 1090 77.5
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1087 77.7
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1665.6 1090 77.3
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1665.6 1082 77.5
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1086 77.5
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1657.9 1085 77.4
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1085 77.2
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1653.6 1091 77.4
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1650.2 1091 76.6
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1649.8 1090 77.1
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1649.0 1074 77.1
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1093 76.9
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1644.0 1096 77.1
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1644.0 1112 75.9
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1642.5 1085 75.9
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1635.9 1084 76.2
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1629.4 1081 76.7
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1626.7 1067 76.8
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1625.1 1106 75.1
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1076 76.5
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1621.3 1086 75.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1619.4 1085 76.2
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1615.9 1087 75.5
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1613.2 1066 76.8
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1611.3 1086 74.3
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1610.9 1086 74.9
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1605.1 1101 74.4
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1600.9 1078 74.7
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1600.1 1099 74.4
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1597.0 1078 75.4
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1596.6 1084 74.8
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1595.1 1084 74.1
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1594.3 1118 72.8
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1594.3 1028 77.4
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1594.3 1074 75.6
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1592.8 1125 73.0
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1590.5 1084 74.2
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1589.7 1007 77.9
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1588.5 1080 75.1
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1587.8 1086 75.0
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1580.8 1196 69.5
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1580.8 1089 73.1
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1580.8 1167 71.1
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1577.0 1179 69.9
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1569.7 1081 73.9
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1564.7 1065 73.4
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1564.7 1075 73.6
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1564.3 1086 73.0
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1562.0 1083 73.9
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1560.0 1065 73.1
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1559.7 1071 73.0
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1556.6 1065 73.1
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1556.6 1071 73.6
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1552.3 1075 72.9
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1550.8 1074 72.8
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1549.3 1074 73.0
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1548.9 1082 72.1
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1548.1 1082 72.6
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1548.1 1074 73.1
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1545.8 1074 72.9
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1544.6 1074 72.9
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1541.2 1007 76.1
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1539.6 1081 72.2
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1539.2 1085 71.6
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1538.9 1076 72.5
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1532.3 1079 72.4
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1530.8 1081 72.5
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1530.4 1070 72.1
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1527.7 1116 70.3
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1526.5 1118 70.2
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1524.6 1082 71.5
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1522.7 1075 72.4
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1521.9 1075 71.3
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1517.3 1077 71.4
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1512.7 1077 71.2
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1511.9 1077 70.9
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1510.7 1083 71.0
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1510.4 1077 71.0
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1508.4 1072 71.5
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1505.0 1125 68.4
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1498.8 1028 73.4
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1471.1 1007 74.2
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1469.9 894 80.4
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1460.3 864 82.9
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1453.3 969 74.2
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1431.4 1116 67.0
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1426.0 1096 69.4
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1416.4 1051 67.3
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1397.9 1014 67.4
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1362.4 748 92.5
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1343.9 1104 65.7
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1343.6 1104 65.6
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1340.1 957 69.0
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1320.4 801 80.9
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1319.3 1006 65.0
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1165.2 1069 57.8
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1149.8 845 70.5
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1130.5 750 77.2
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1103.6 722 75.8
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1077.0 997 55.6
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1076.6 1021 53.4
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 7.1e-310 1067.4 1006 53.8
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 9.3e-310 1067.0 739 72.7
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.7e-274 949.9 777 61.3
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 4.4e-267 925.2 880 59.3
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 3.8e-263 912.1 844 57.0
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.1e-257 894.0 596 76.5
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 1.0e-247 860.9 580 71.7
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 5.6e-238 828.6 967 45.2
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 4.3e-222 775.8 671 58.9
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 9.6e-214 748.0 646 61.5
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.2e-210 736.9 756 53.7
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.1e-189 667.2 445 76.0
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.1e-175 619.4 408 75.0
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.7e-175 619.0 532 62.6
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 2.2e-165 587.4 412 72.6
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.0e-159 567.0 508 62.2
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.3e-154 551.6 405 66.9
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 7.2e-153 545.8 347 81.0
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 9.4e-153 545.4 399 71.9
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 4.0e-151 540.0 393 67.2
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.0e-146 525.4 472 62.1
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.9e-130 470.7 393 62.6
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.8e-128 464.2 329 68.4
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.3e-127 461.1 309 72.8
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.4e-103 382.1 952 30.6
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.9e-98 364.0 941 28.7
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.5e-97 362.1 227 78.4
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 9.6e-97 359.4 950 27.8
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 3.3e-89 334.3 278 66.5
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 5.6e-81 307.0 906 28.5
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.5e-65 255.0 154 78.6
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.6e-59 235.7 873 23.8
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 3.0e-50 204.9 332 35.8
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 7.4e-49 200.3 310 42.3
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 7.4e-49 200.3 222 48.2
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.5e-46 192.6 220 53.6
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 7.7e-46 190.3 124 76.6
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 2.3e-42 178.7 151 68.9
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.6e-38 165.2 183 50.8
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 2.9e-37 161.8 163 55.8
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 6.5e-37 160.6 125 65.6
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 1.5e-36 159.5 269 37.2
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 6.1e-35 154.1 447 28.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 6.7e-34 150.6 149 54.4
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 5.5e-28 131.0 152 48.7
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 5.7e-25 120.9 111 54.1
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.4e-23 116.3 454 25.3
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 3.5e-22 111.7 163 37.4
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 4.5e-22 111.3 81 64.2
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 5.9e-22 110.9 296 26.4
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.6e-17 95.5 83 60.2
CAN.G241.30 Capsicum annuum HOM05D003855 ORTHO05D115394 1.8e-15 89.4 145 45.5
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.5e-12 79.0 55 63.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 5.6e-12 77.8 56 64.3
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.0e-09 69.3 48 64.6
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 7.5e-09 67.4 45 71.1
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.4e-07 63.2 36 80.6
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-07 62.8 77 45.5
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 1.8e-07 62.8 166 36.7


User provided reference genes

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