Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002097g0060 Nicotiana tabacum HOM05D000093 ORTHO05D283797 6.5e-30 133.3 61 100.0
Nitab4.5_0005249g0030 Nicotiana tabacum HOM05D000093 ORTHO05D000814 1.2e-12 75.9 36 91.7
CAN.G1041.11 Capsicum annuum HOM05D000093 ORTHO05D000814 2.3e-11 71.6 37 83.8
Sopen01g050440 Solanum pennellii HOM05D000093 ORTHO05D000814 3.9e-11 70.9 48 68.8
PGSC0003DMG400025795 Solanum tuberosum HOM05D000093 ORTHO05D000814 3.9e-11 70.9 37 81.1
Peaxi162Scf00016g01820 Petunia axillaris HOM05D000093 ORTHO05D000814 8.8e-11 69.7 35 80.0
Solyc01g108210.4 Solanum lycopersicum HOM05D000093 ORTHO05D000814 3.7e-09 64.3 37 75.7
Lj5A209T82 Lonicera japonica HOM05D000093 ORTHO05D000814 1.5e-07 58.9 32 65.6
CANSAT25G0812 Cannabis sativa HOM05D000093 ORTHO05D000814 2.0e-07 58.5 53 49.1
CANSAT25G3581 Cannabis sativa HOM05D000093 ORTHO05D000814 2.0e-07 58.5 53 49.1
TAR381G1405 Trochodendron aralioides HOM05D000093 ORTHO05D000814 2.0e-07 58.5 32 65.6
TAR628G1466 Trochodendron aralioides HOM05D000093 ORTHO05D000814 2.6e-07 58.2 32 65.6
Nitab4.5_0004547g0010 Nicotiana tabacum HOM05D000093 ORTHO05D000814 4.5e-07 57.4 32 59.4
Peaxi162Scf00684g00573 Petunia axillaris HOM05D000093 ORTHO05D000814 4.5e-07 57.4 33 57.6
Atru.chr5.2697 Acer truncatum HOM05D000093 ORTHO05D000814 5.9e-07 57.0 51 49.0
Migut.B00350 Erythranthe guttata HOM05D000093 ORTHO05D000814 5.9e-07 57.0 29 72.4
Nn1g04856 Nelumbo nucifera HOM05D000093 ORTHO05D000814 5.9e-07 57.0 33 60.6
Nn5g30310 Nelumbo nucifera HOM05D000093 ORTHO05D000814 5.9e-07 57.0 32 62.5
PGR083G0679 Punica granatum HOM05D000093 ORTHO05D000814 7.7e-07 56.6 30 66.7
Gohir.D02G209900 Gossypium hirsutum HOM05D000093 ORTHO05D000814 1.0e-06 56.2 31 61.3
MD05G1081400 Malus domestica HOM05D000093 ORTHO05D000814 1.0e-06 56.2 30 66.7
TWI56G0458 Tripterygium wilfordii HOM05D000093 ORTHO05D000814 1.0e-06 56.2 32 62.5
MD15G1082600 Malus domestica HOM05D000093 ORTHO05D000814 1.3e-06 55.8 35 54.3
COL.COLO4_32653 Corchorus olitorius HOM05D000093 ORTHO05D000814 1.7e-06 55.5 30 63.3
Duzib052G0379 Durio zibethinus HOM05D000093 ORTHO05D000814 1.7e-06 55.5 32 59.4
Gorai.005G237800 Gossypium raimondii HOM05D000093 ORTHO05D000814 1.7e-06 55.5 31 61.3
TWI31G1023 Tripterygium wilfordii HOM05D000093 ORTHO05D000814 1.7e-06 55.5 29 65.5
COL.COLO4_26511 Corchorus olitorius HOM05D000093 ORTHO05D000814 2.2e-06 55.1 32 62.5
Gohir.A05G202500 Gossypium hirsutum HOM05D000093 ORTHO05D000814 2.2e-06 55.1 30 63.3
Gohir.D05G205600 Gossypium hirsutum HOM05D000093 ORTHO05D000814 2.2e-06 55.1 30 63.3
Gorai.009G211900 Gossypium raimondii HOM05D000093 ORTHO05D000814 2.2e-06 55.1 30 63.3
MD02G1171600 Malus domestica HOM05D000093 ORTHO05D000814 2.2e-06 55.1 54 48.1
Potri.009G101700 Populus trichocarpa HOM05D000093 ORTHO05D000814 2.2e-06 55.1 33 60.6
QL11p035864 Quercus lobata HOM05D000093 ORTHO05D000814 2.2e-06 55.1 31 58.1
VMungo0647G2083 Vigna mungo HOM05D000093 ORTHO05D000814 2.2e-06 55.1 32 62.5
Haze_10083 Corylus avellana HOM05D000093 ORTHO05D000814 2.9e-06 54.7 32 59.4
Peaxi162Scf00252g00068 Petunia axillaris HOM05D000093 ORTHO05D000814 2.9e-06 54.7 34 58.8
TWI36G0266 Tripterygium wilfordii HOM05D000093 ORTHO05D000814 2.9e-06 54.7 32 62.5
Gohir.A03G189000 Gossypium hirsutum HOM05D000093 ORTHO05D000814 3.8e-06 54.3 32 59.4
Rhsim06G0050000 Rhododendron simsii HOM05D000093 ORTHO05D000814 3.8e-06 54.3 30 63.3
SGA_v2.0_scaffold90G27655 Striga asiatica HOM05D000093 ORTHO05D000814 3.8e-06 54.3 29 65.5
THA.LOC104819469 Tarenaya hassleriana HOM05D000093 ORTHO05D000814 3.8e-06 54.3 30 63.3
Thecc.02G101100 Theobroma cacao HOM05D000093 ORTHO05D000814 3.8e-06 54.3 30 60.0
vmacro21520 Vaccinium macrocarpon HOM05D000093 ORTHO05D000814 3.8e-06 54.3 30 63.3
Actinidia22630 Actinidia chinensis HOM05D000093 ORTHO05D000814 5.0e-06 53.9 32 62.5
Gohir.A13G040500 Gossypium hirsutum HOM05D000093 ORTHO05D000814 5.0e-06 53.9 30 60.0
Gohir.D13G039200 Gossypium hirsutum HOM05D000093 ORTHO05D000814 5.0e-06 53.9 30 60.0
Gorai.013G044100 Gossypium raimondii HOM05D000093 ORTHO05D000814 5.0e-06 53.9 30 60.0
Manes.05G174003 Manihot esculenta HOM05D000093 ORTHO05D000814 5.0e-06 53.9 30 63.3
Manes.10G071600 Manihot esculenta HOM05D000093 ORTHO05D000814 5.0e-06 53.9 33 60.6
Potri.002G126100 Populus trichocarpa HOM05D000093 ORTHO05D000814 5.0e-06 53.9 32 62.5
QL02p004794 Quercus lobata HOM05D000093 ORTHO05D000814 5.0e-06 53.9 30 63.3
GSVIVG01031738001 Vitis vinifera HOM05D000093 ORTHO05D000814 5.0e-06 53.9 28 64.3
Atru.chr13.695 Acer truncatum HOM05D000093 ORTHO05D000814 6.5e-06 53.5 32 59.4
Cfa004524 Carpinus fangiana HOM05D000093 ORTHO05D000814 6.5e-06 53.5 32 59.4
Duzib116G0587 Durio zibethinus HOM05D000093 ORTHO05D000814 6.5e-06 53.5 30 63.3
Oeu013712.1 Olea europaea HOM05D000093 ORTHO05D000814 6.5e-06 53.5 30 60.0
Potri.014G029100 Populus trichocarpa HOM05D000093 ORTHO05D000814 6.5e-06 53.5 32 59.4
CSS0027354 Camellia sinensis var. sinensis HOM05D000093 ORTHO05D000814 8.5e-06 53.1 30 60.0
CSS0039798 Camellia sinensis var. sinensis HOM05D000093 ORTHO05D000814 8.5e-06 53.1 30 60.0
Duzib132G0196 Durio zibethinus HOM05D000093 ORTHO05D000814 8.5e-06 53.1 30 63.3
Hma1.2p1_0474F.1_g160410 Hydrangea macrophylla HOM05D000093 ORTHO05D000814 8.5e-06 53.1 30 56.7
Lj4A58T22 Lonicera japonica HOM05D000093 ORTHO05D000814 8.5e-06 53.1 30 63.3
MBI06_g02555_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 8.5e-06 53.1 32 59.4
Manes.18G037400 Manihot esculenta HOM05D000093 ORTHO05D000814 8.5e-06 53.1 30 63.3
Nitab4.5_0003118g0030 Nicotiana tabacum HOM05D000093 ORTHO05D000814 8.5e-06 53.1 34 55.9


User provided reference genes

Program Settings