Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.1e-94 349.0 173 100.0
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.4e-75 283.9 151 92.1
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 8.4e-75 283.9 151 92.1
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.4e-74 282.3 151 91.4
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.4e-74 282.3 151 91.4
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.2e-73 280.0 151 89.4
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.0e-59 233.8 150 74.0
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.1e-58 230.3 151 72.8
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 3.2e-58 228.8 151 72.2
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 4.2e-58 228.4 151 71.5
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 5.5e-58 228.0 151 71.5
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 7.1e-58 227.6 139 76.3
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 7.1e-58 227.6 150 70.7
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 1.2e-57 226.9 151 72.8
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.6e-57 226.5 144 75.7
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 2.7e-57 225.7 150 71.3
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.8e-56 223.0 137 80.3
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.3e-56 222.6 151 69.5
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 6.7e-56 221.1 151 70.2
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.7e-56 221.1 139 75.5
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.1e-55 220.3 144 70.1
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.5e-55 219.9 150 68.7
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.9e-55 219.5 151 70.9
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.9e-55 219.5 139 72.7
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.9e-55 219.5 151 69.5
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.3e-55 218.8 151 68.2
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.3e-55 218.8 151 68.9
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 4.3e-55 218.4 151 68.9
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 4.3e-55 218.4 142 71.8
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 4.3e-55 218.4 150 69.3
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 5.7e-55 218.0 151 68.9
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.7e-55 218.0 139 74.8
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 7.4e-55 217.6 151 68.9
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 7.4e-55 217.6 151 68.9
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 9.6e-55 217.2 151 68.2
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.6e-54 216.5 141 73.0
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.6e-54 216.5 151 74.2
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.6e-54 216.5 144 68.1
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.6e-54 216.5 147 66.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.8e-54 215.7 138 75.4
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.8e-54 215.7 150 68.0
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.8e-54 215.7 139 74.1
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.7e-54 215.3 151 69.5
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 4.8e-54 214.9 141 73.8
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.8e-54 214.9 139 74.1
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 6.2e-54 214.5 147 68.7
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 6.2e-54 214.5 151 68.9
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 6.2e-54 214.5 141 73.8
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 8.2e-54 214.2 139 74.8
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 8.2e-54 214.2 151 69.5
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 8.2e-54 214.2 141 70.2
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.2e-54 214.2 141 70.2
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.1e-53 213.8 151 68.9
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.1e-53 213.8 151 68.2
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.1e-53 213.8 150 66.0
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.4e-53 213.4 151 67.5
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.4e-53 213.4 142 69.7
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.4e-53 213.4 150 68.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.8e-53 213.0 151 68.2
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.8e-53 213.0 141 69.5
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.1e-53 212.2 131 75.6
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 4.1e-53 211.8 150 65.3
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 5.3e-53 211.5 151 66.9
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 5.3e-53 211.5 151 66.9
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 5.3e-53 211.5 139 73.4
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 6.9e-53 211.1 151 66.9
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 6.9e-53 211.1 141 69.5
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 9.0e-53 210.7 143 70.6
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.2e-52 210.3 139 71.2
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.2e-52 210.3 153 67.3
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.5e-52 209.9 139 71.9
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.5e-52 209.9 151 66.2
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.0e-52 209.5 151 64.9
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 3.4e-52 208.8 139 72.7
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 4.5e-52 208.4 139 71.9
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.7e-51 206.5 139 71.2
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.7e-51 206.5 139 71.2
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 2.9e-51 205.7 130 76.9
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 3.8e-51 205.3 151 64.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 5.0e-51 204.9 141 68.1
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 6.5e-51 204.5 151 64.2
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.4e-50 203.4 139 70.5
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.9e-50 203.0 150 63.3
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 3.2e-50 202.2 151 64.9
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 4.2e-50 201.8 139 69.1
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 4.2e-50 201.8 151 64.2
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 5.5e-50 201.4 151 64.9
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 5.5e-50 201.4 139 69.1
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 5.5e-50 201.4 142 65.5
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.7e-49 199.1 132 71.2
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 3.5e-49 198.7 151 62.9
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.3e-48 196.8 132 69.7
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 1.8e-48 196.4 139 66.9
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 3.9e-48 195.3 137 68.6
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 5.1e-48 194.9 132 68.9
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.1e-48 194.9 124 76.6
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 6.7e-48 194.5 135 68.1
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 8.7e-48 194.1 139 68.3
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.7e-48 194.1 138 69.6
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.1e-47 193.7 138 65.9
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.5e-47 193.4 136 66.2
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.9e-47 193.0 128 71.9
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.9e-47 193.0 132 69.7
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.5e-47 192.6 139 63.3
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 3.3e-47 192.2 138 65.2
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 7.4e-47 191.0 132 68.9
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 7.4e-47 191.0 131 68.7
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 9.7e-47 190.7 132 68.9
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.3e-46 190.3 151 62.9
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.6e-46 189.9 131 68.7
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.6e-46 189.9 150 62.0
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 2.2e-46 189.5 130 69.2
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 2.8e-46 189.1 132 67.4
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 2.8e-46 189.1 132 67.4
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 3.7e-46 188.7 140 65.0
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 6.3e-46 188.0 132 68.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.1e-45 187.2 128 70.3
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.8e-45 186.4 137 65.0
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.9e-45 184.5 128 68.8
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 6.9e-45 184.5 142 62.7
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.0e-44 183.0 125 70.4
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.0e-44 183.0 125 70.4
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 2.0e-44 183.0 139 59.7
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.6e-44 182.6 131 65.6
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 2.6e-44 182.6 140 62.9
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.9e-44 181.4 128 68.0
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 7.7e-44 181.0 130 63.8
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.0e-43 180.6 131 66.4
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.3e-43 180.3 136 64.0
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.3e-43 180.3 139 61.2
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.7e-43 179.9 138 63.0
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.7e-43 179.9 138 63.8
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 2.9e-43 179.1 132 62.9
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.9e-43 179.1 142 62.0
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 8.5e-43 177.6 139 64.7
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 5.5e-42 174.9 140 59.3
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 9.4e-42 174.1 138 62.3
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.6e-41 173.3 142 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 6.1e-41 171.4 126 62.7
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 7.9e-41 171.0 134 61.2
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.4e-40 170.2 100 77.0
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 6.7e-40 167.9 128 58.6
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 8.8e-40 167.5 130 60.8
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.1e-39 167.2 126 62.7
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 2.0e-39 166.4 130 60.0
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.3e-39 165.2 142 57.0
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 5.7e-39 164.9 132 59.1
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 5.7e-39 164.9 119 68.1
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-38 163.7 130 60.0
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 3.1e-37 159.1 129 57.4
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.1e-37 158.7 126 58.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 6.9e-37 157.9 145 53.8
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 2.6e-36 156.0 100 72.0
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.8e-35 152.1 119 62.2
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.2e-34 149.1 103 68.9
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.6e-33 146.7 126 54.0
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 6.1e-33 144.8 99 68.7
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.1e-31 140.6 126 56.3
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 9.7e-31 137.5 89 71.9
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 2.2e-30 136.3 152 48.0
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.1e-29 134.0 150 50.7
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 4.2e-26 122.1 128 54.7
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.7e-25 119.4 135 49.6
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.0e-24 115.5 135 48.9
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 8.8e-24 114.4 135 48.9
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.6e-23 112.8 73 68.5
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.8e-19 99.0 123 41.5
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 8.5e-19 97.8 67 65.7
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.9e-18 96.7 84 57.1
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 5.2e-16 88.6 65 67.7
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.7e-14 83.6 60 61.7
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.7e-14 83.6 60 60.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.1e-13 79.3 58 63.8
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 9.1e-13 77.8 51 68.6
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.7e-12 76.3 107 41.1
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.0e-08 64.3 107 33.6
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 4.0e-08 62.4 80 40.0
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 2.0e-07 60.1 139 28.8
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.7e-06 57.0 61 37.7


User provided reference genes

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