Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002093g0160 Nicotiana tabacum HOM05D011968 ORTHO05D014241 3.4e-94 348.2 163 100.0
Nitab4.5_0005831g0080 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.8e-66 256.1 201 66.7
Nitab4.5_0000085g0170 Nicotiana tabacum HOM05D011968 ORTHO05D014241 8.8e-66 253.8 185 69.7
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 9.7e-57 223.8 187 64.2
Nitab4.5_0013560g0040 Nicotiana tabacum HOM05D011968 ORTHO05D014241 6.5e-53 211.1 182 63.7
Nitab4.5_0004300g0080 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.1e-43 179.5 147 66.0
Nitab4.5_0000866g0220 Nicotiana tabacum HOM05D011968 ORTHO05D014241 3.2e-36 155.6 152 56.6
Nitab4.5_0010333g0140 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.9e-29 132.5 90 72.2
Nitab4.5_0000844g0150 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.9e-28 129.8 108 63.0
Nitab4.5_0012599g0070 Nicotiana tabacum HOM05D011968 ORTHO05D014241 5.0e-21 105.1 54 88.9
MBI03_g45449_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 1.2e-19 100.5 82 65.9
MBI05_g23324_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 2.3e-18 96.3 82 63.4
Nitab4.5_0000819g0040 Nicotiana tabacum HOM05D002921 ORTHO05D003258 2.9e-16 89.4 53 77.4
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 8.0e-11 71.2 84 44.0
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.1e-10 69.3 63 57.1
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 3.1e-10 69.3 68 51.5
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 4.0e-10 68.9 47 61.7
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 4.0e-10 68.9 66 53.0
Nitab4.5_0010586g0020 Nicotiana tabacum HOM05D011968 ORTHO05D014241 4.0e-10 68.9 37 83.8
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 6.8e-10 68.2 66 50.0
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 6.8e-10 68.2 45 64.4
Nn1g10174 Nelumbo nucifera HOM05D011968 ORTHO05D014241 8.9e-10 67.8 35 85.7
Nn2g13591 Nelumbo nucifera HOM05D011968 ORTHO05D014241 8.9e-10 67.8 35 85.7
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 1.5e-09 67.0 47 55.3
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.0e-09 66.6 47 63.8
Hma1.2p1_1430F.1_g282940 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.6e-09 66.2 60 56.7
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 4.4e-09 65.5 58 50.0
MBI05_g11249_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 5.8e-09 65.1 42 76.2
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 7.5e-09 64.7 66 48.5
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 9.8e-09 64.3 63 49.2
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 2.2e-08 63.2 63 46.0
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 2.2e-08 63.2 47 57.4
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 3.7e-08 62.4 48 54.2
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 3.7e-08 62.4 48 54.2
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 3.7e-08 62.4 48 54.2
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 3.7e-08 62.4 48 54.2
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.7e-08 62.4 48 54.2
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 3.7e-08 62.4 45 57.8
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 6.4e-08 61.6 49 57.1
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 6.4e-08 61.6 49 51.0
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 8.3e-08 61.2 48 54.2
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.3e-08 61.2 49 53.1
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.3e-08 61.2 49 53.1
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.3e-08 61.2 49 53.1
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.3e-08 61.2 49 53.1
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.3e-08 61.2 49 53.1
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.3e-08 61.2 49 53.1
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 8.3e-08 61.2 49 53.1
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 8.3e-08 61.2 49 53.1
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 8.3e-08 61.2 49 53.1
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 1.1e-07 60.8 63 47.6
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.1e-07 60.8 46 56.5
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 1.4e-07 60.5 49 55.1
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 1.4e-07 60.5 68 50.0
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 1.4e-07 60.5 69 39.1
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 1.4e-07 60.5 69 39.1
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 1.9e-07 60.1 49 53.1
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 1.9e-07 60.1 49 53.1
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.1e-07 58.9 49 51.0
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 5.4e-07 58.5 34 67.6
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 5.4e-07 58.5 49 51.0
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 5.4e-07 58.5 49 51.0
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 5.4e-07 58.5 47 48.9
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 5.4e-07 58.5 72 44.4
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.4e-07 58.5 49 49.0
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.4e-07 58.5 49 49.0
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 5.4e-07 58.5 49 49.0
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 9.2e-07 57.8 47 48.9
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.6e-06 57.0 49 51.0
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.6e-06 57.0 49 51.0
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 1.6e-06 57.0 49 51.0
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 1.6e-06 57.0 49 51.0
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 1.6e-06 57.0 49 51.0
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 1.6e-06 57.0 49 51.0
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 2.1e-06 56.6 49 51.0
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 2.1e-06 56.6 49 51.0
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 2.1e-06 56.6 63 44.4
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 2.7e-06 56.2 46 52.2
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 2.7e-06 56.2 47 53.2
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 3.5e-06 55.8 46 47.8
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 3.5e-06 55.8 55 50.9
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 4.6e-06 55.5 49 46.9
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 4.6e-06 55.5 49 46.9
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 4.6e-06 55.5 34 58.8
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 6.0e-06 55.1 54 42.6
arahy.Tifrunner.gnm1.ann1.PK4DTL Arachis hypogaea HOM05D012916 ORTHO05D014365 7.8e-06 54.7 40 57.5
Nn1g09933 Nelumbo nucifera HOM05D002660 ORTHO05D003902 7.8e-06 54.7 101 32.7


User provided reference genes

Program Settings