Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.8e-98 361.7 205 100.0
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.8e-77 291.6 159 98.1
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.4e-65 253.4 163 89.0
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 7.1e-65 251.1 163 89.0
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 3.7e-61 238.8 182 79.1
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 5.3e-60 235.0 159 72.3
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.0e-59 233.0 166 77.7
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.0e-58 230.7 165 73.3
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 9.3e-57 224.2 165 72.1
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 3.6e-56 222.2 166 75.3
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 7.4e-54 214.5 159 72.3
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.8e-53 212.6 158 77.8
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.8e-53 212.6 158 77.8
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 6.3e-53 211.5 156 68.6
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 6.3e-53 211.5 165 66.7
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.1e-52 210.7 160 71.2
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 2.4e-52 209.5 160 66.2
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.1e-52 209.1 168 63.1
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 4.1e-52 208.8 160 65.6
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 6.9e-52 208.0 160 66.2
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.6e-51 206.1 162 69.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.6e-51 206.1 162 69.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 2.6e-51 206.1 163 65.0
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.6e-51 206.1 159 66.7
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 3.4e-51 205.7 154 67.5
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 3.4e-51 205.7 161 72.7
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.7e-51 204.5 156 66.7
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 7.7e-51 204.5 161 72.0
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 1.0e-50 204.1 158 69.6
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 1.3e-50 203.8 151 73.5
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 1.3e-50 203.8 157 65.6
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.3e-50 203.8 157 65.6
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 1.7e-50 203.4 154 65.6
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 3.8e-50 202.2 161 62.1
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 3.8e-50 202.2 161 62.1
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 6.5e-50 201.4 159 65.4
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 2.5e-49 199.5 159 64.2
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.2e-49 198.7 156 64.7
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 5.5e-49 198.4 165 60.0
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 7.2e-49 198.0 154 68.2
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 9.4e-49 197.6 158 67.7
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.2e-48 197.2 162 64.2
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.2e-48 197.2 162 67.9
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 3.6e-48 195.7 162 64.2
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.6e-48 195.3 160 64.4
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 4.6e-48 195.3 160 64.4
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 4.6e-48 195.3 149 71.1
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 6.1e-48 194.9 159 65.4
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 7.9e-48 194.5 160 63.8
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 7.9e-48 194.5 165 66.1
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 1.4e-47 193.7 158 68.4
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.4e-47 193.7 151 63.6
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.8e-47 193.4 177 61.0
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.8e-47 193.4 163 68.1
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.8e-47 193.4 157 65.6
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 1.8e-47 193.4 149 65.8
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 3.0e-47 192.6 166 63.3
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 6.7e-47 191.4 149 62.4
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.1e-46 190.7 157 62.4
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.1e-46 190.7 158 63.3
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.1e-46 190.7 157 63.7
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.1e-46 190.7 157 63.7
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.5e-46 190.3 160 60.0
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.5e-46 190.3 146 70.5
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.0e-46 189.9 160 61.9
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.3e-46 189.1 160 63.1
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 4.4e-46 188.7 157 57.3
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 5.7e-46 188.3 158 59.5
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 5.7e-46 188.3 158 59.5
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 5.7e-46 188.3 158 59.5
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 5.7e-46 188.3 161 61.5
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 7.4e-46 188.0 152 69.7
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 7.4e-46 188.0 157 59.9
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.4e-46 188.0 142 66.2
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.4e-46 188.0 155 63.9
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 9.7e-46 187.6 158 63.9
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.7e-45 186.8 158 63.9
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.7e-45 186.8 157 58.6
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.7e-45 186.8 161 61.5
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 2.2e-45 186.4 159 59.1
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.8e-45 186.0 157 59.2
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 3.7e-45 185.7 157 58.0
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 3.7e-45 185.7 160 61.2
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 3.7e-45 185.7 160 61.2
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 3.7e-45 185.7 159 61.0
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 3.7e-45 185.7 164 61.0
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 6.3e-45 184.9 157 57.3
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.3e-45 184.9 157 61.8
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 8.2e-45 184.5 159 60.4
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.1e-44 184.1 150 59.3
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.1e-44 184.1 151 64.2
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.1e-44 184.1 155 59.4
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 1.1e-44 184.1 157 58.6
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.1e-44 184.1 157 58.6
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.4e-44 183.7 159 61.6
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.4e-44 183.7 162 66.7
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 1.8e-44 183.3 171 57.9
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 5.3e-44 181.8 159 61.6
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 9.1e-44 181.0 157 61.1
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.5e-43 180.3 161 59.0
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 5.9e-43 178.3 153 64.7
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 2.2e-42 176.4 154 63.6
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 5.0e-42 175.3 157 59.2
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.4e-41 173.7 153 54.2
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 9.4e-41 171.0 152 64.5
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.1e-40 169.9 165 56.4
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 1.1e-38 164.1 149 55.0
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.6e-38 162.9 156 51.3
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 3.3e-38 162.5 159 53.5
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 7.4e-38 161.4 149 53.0
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 9.7e-38 161.0 162 51.9
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 3.1e-36 156.0 153 60.1
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.1e-36 155.6 137 56.9
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.2e-35 154.1 149 52.3
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 1.2e-35 154.1 146 64.4
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 1.6e-35 153.7 150 55.3
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 3.2e-33 146.0 150 50.0
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 5.5e-33 145.2 134 54.5
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 7.2e-33 144.8 159 57.9
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.4e-31 140.6 140 56.4
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.2e-30 137.5 140 52.1
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.2e-30 137.5 155 54.2
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 2.0e-30 136.7 156 46.2
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 2.0e-30 136.7 142 51.4
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 2.6e-30 136.3 154 44.8
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 4.4e-30 135.6 148 46.6
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 3.7e-29 132.5 157 42.7
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.8e-28 130.2 123 53.7
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 4.1e-28 129.0 143 45.5
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 4.5e-27 125.6 157 41.4
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.1e-25 120.9 154 42.2
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 3.2e-25 119.4 139 42.4
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.1e-24 116.7 78 57.7
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 2.7e-24 116.3 88 52.3
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 4.7e-24 115.5 127 52.0
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 8.0e-24 114.8 62 77.4
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 8.8e-23 111.3 87 48.3
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.6e-22 109.8 131 51.1
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 2.6e-22 109.8 133 62.4
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.2e-21 106.7 131 50.4
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 6.3e-21 105.1 83 53.0
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 6.3e-21 105.1 84 48.8
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 9.1e-20 101.3 152 37.5
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 9.1e-20 101.3 117 45.3
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.0e-18 97.8 158 34.2
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.5e-18 95.1 84 44.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 7.2e-17 91.7 152 38.8
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.6e-16 90.5 84 45.2
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.8e-15 87.0 45 82.2
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 4.4e-14 82.4 120 48.3
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 9.8e-14 81.3 124 39.5
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 4.9e-13 79.0 104 44.2
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.4e-12 76.6 113 48.7
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 3.5e-11 72.8 45 57.8
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 3.3e-09 66.2 88 42.0
Oeu041536.1 Olea europaea HOM05D004429 ORTHO05D288779 3.4e-06 56.2 96 35.4


User provided reference genes

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