Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002062g0020 Nicotiana tabacum HOM05D004830 ORTHO05D005310 5.5e-107 391.0 195 100.0
Nitab4.5_0002855g0030 Nicotiana tabacum HOM05D004830 ORTHO05D005310 1.2e-90 336.7 183 92.9
Peaxi162Scf00536g00113 Petunia axillaris HOM05D004830 ORTHO05D005310 2.4e-78 295.8 182 82.4
Actinidia08868 Actinidia chinensis HOM05D004830 ORTHO05D005310 9.5e-67 257.3 192 66.7
Lj5A97T92 Lonicera japonica HOM05D004830 ORTHO05D005310 1.8e-65 253.1 181 69.1
CSS0034026 Camellia sinensis var. sinensis HOM05D004830 ORTHO05D005310 4.0e-65 251.9 181 68.5
MSTRG.11282 Avicennia marina HOM05D004830 ORTHO05D005310 5.2e-65 251.5 181 69.1
Cfa018828 Carpinus fangiana HOM05D004830 ORTHO05D005310 8.9e-65 250.8 193 65.8
Oeu056012.1 Olea europaea HOM05D004830 ORTHO05D005310 2.6e-64 249.2 181 68.5
Rhsim12G0174200 Rhododendron simsii HOM05D004830 ORTHO05D005310 4.4e-64 248.4 193 66.3
Migut.I00505 Erythranthe guttata HOM05D004830 ORTHO05D005310 9.8e-64 247.3 180 66.1
Thecc.03G128400 Theobroma cacao HOM05D004830 ORTHO05D005310 9.8e-64 247.3 181 67.4
GSVIVG01008536001 Vitis vinifera HOM05D004830 ORTHO05D005310 1.3e-63 246.9 181 68.0
Manes.14G051600 Manihot esculenta HOM05D004830 ORTHO05D005310 4.9e-63 245.0 180 67.2
CiPaw.11G008200 Carya illinoinensis HOM05D004830 ORTHO05D005310 8.3e-63 244.2 193 64.8
Atru.chr9.1044 Acer truncatum HOM05D004830 ORTHO05D005310 4.1e-62 241.9 182 65.4
TAR622G0015 Trochodendron aralioides HOM05D004830 ORTHO05D005310 1.2e-61 240.4 181 66.3
QL10p003269 Quercus lobata HOM05D004830 ORTHO05D005310 3.5e-61 238.8 193 64.2
RcHm_v2.0_Chr7g0190301 Rosa chinensis HOM05D004830 ORTHO05D005310 1.7e-60 236.5 188 62.2
Cpa.g.sc13.124 Carica papaya HOM05D004830 ORTHO05D005310 8.6e-60 234.2 183 63.4
Duzib084G0035 Durio zibethinus HOM05D004830 ORTHO05D005310 8.6e-60 234.2 181 64.1
COL.COLO4_28101 Corchorus olitorius HOM05D004830 ORTHO05D005310 5.6e-59 231.5 192 61.5
MD06G1142500 Malus domestica HOM05D004830 ORTHO05D005310 9.5e-59 230.7 188 61.2
Potri.012G097200 Populus trichocarpa HOM05D004830 ORTHO05D005310 1.2e-58 230.3 182 64.8
QL10p003237 Quercus lobata HOM05D004830 ORTHO05D005310 1.2e-58 230.3 181 64.1
Aqoxy5G03391 Aquilegia oxysepala HOM05D004830 ORTHO05D005310 2.1e-58 229.6 181 60.8
Aqoxy7G00964 Aquilegia oxysepala HOM05D004830 ORTHO05D005310 2.1e-58 229.6 181 60.8
Lalb_Chr11g0069591 Lupinus albus HOM05D004830 ORTHO05D005310 4.7e-58 228.4 188 57.4
QL10p003210 Quercus lobata HOM05D004830 ORTHO05D005310 8.0e-58 227.6 193 61.7
Gohir.A03G052400 Gossypium hirsutum HOM05D004830 ORTHO05D005310 1.4e-57 226.9 181 61.9
Prupe.5G151800 Prunus persica HOM05D004830 ORTHO05D005310 2.3e-57 226.1 181 60.8
Ciclev10022323m.g Citrus clementina HOM05D004830 ORTHO05D005310 4.0e-57 225.3 182 62.6
FAN13G1978 Fragaria x ananassa HOM05D004830 ORTHO05D005310 6.8e-57 224.6 188 60.6
Gorai.003G121000 Gossypium raimondii HOM05D004830 ORTHO05D005310 6.8e-57 224.6 181 61.9
Glyma.04G195400 Glycine max HOM05D004830 ORTHO05D005310 1.2e-56 223.8 188 59.0
Ca_24504_v3 Cicer arietinum L. HOM05D004830 ORTHO05D005310 2.0e-56 223.0 181 61.3
Lj1g0026153 Lotus japonicus HOM05D004830 ORTHO05D005310 4.4e-56 221.9 188 61.7
VMungo1309G0155 Vigna mungo HOM05D004830 ORTHO05D005310 1.7e-55 219.9 188 58.5
ATR0561G210 Amborella trichopoda HOM05D004830 ORTHO05D005310 4.9e-55 218.4 182 61.5
FAN18G1516 Fragaria x ananassa HOM05D004830 ORTHO05D005310 4.9e-55 218.4 188 59.6
Glyma.06G170600 Glycine max HOM05D004830 ORTHO05D005310 6.4e-55 218.0 195 57.4
Eucgr.K02732 Eucalyptus grandis HOM05D004830 ORTHO05D005310 8.3e-55 217.6 178 60.1
FvH4_5g08220 Fragaria vesca HOM05D004830 ORTHO05D005310 1.1e-54 217.2 188 59.6
arahy.Tifrunner.gnm1.ann1.CC2DBD Arachis hypogaea HOM05D004830 ORTHO05D005310 1.4e-54 216.9 191 56.0
FAN08G1417 Fragaria x ananassa HOM05D004830 ORTHO05D005310 2.4e-54 216.1 181 59.7
Phvul.009G166700 Phaseolus vulgaris HOM05D004830 ORTHO05D005310 2.4e-54 216.1 188 57.4
arahy.Tifrunner.gnm1.ann1.228PAQ Arachis hypogaea HOM05D004830 ORTHO05D005310 3.2e-54 215.7 191 56.0
PGR044G2645 Punica granatum HOM05D004830 ORTHO05D005310 2.0e-53 213.0 189 56.6
CDE02G3469 Ceratophyllum demersum HOM05D004830 ORTHO05D005310 6.0e-53 211.5 181 59.1
Medtr3g089170 Medicago truncatula HOM05D004830 ORTHO05D005310 7.8e-53 211.1 188 56.9
PSO063G3292 Papaver somniferum HOM05D004830 ORTHO05D005310 7.8e-53 211.1 181 59.7
PSO782G4089 Papaver somniferum HOM05D004830 ORTHO05D005310 1.1e-51 207.2 181 58.0
ATR0332G003 Amborella trichopoda HOM05D004830 ORTHO05D005310 2.1e-50 203.0 182 58.8
MBI13_g01839_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 5.2e-49 198.4 148 66.2
Os08g0530500 Oryza sativa ssp. japonica HOM05D004830 ORTHO05D005310 1.1e-46 190.7 178 54.5
vmacro16674 Vaccinium macrocarpon HOM05D004830 ORTHO05D005310 1.1e-46 190.7 167 59.9
Cc00_g11930 Coffea canephora HOM05D004830 ORTHO05D005310 2.4e-46 189.5 191 51.3
Lsat_1_v5_gn_4_80120 Lactuca sativa HOM05D004830 ORTHO05D005310 1.6e-45 186.8 178 56.2
unitig_8.g3032 Utricularia gibba HOM05D004830 ORTHO05D005310 1.7e-44 183.3 182 51.1
Haze_07222 Corylus avellana HOM05D004830 ORTHO05D005310 2.3e-44 183.0 177 54.2
HanXRQChr09g0273121 Helianthus annuus HOM05D004830 ORTHO05D005310 5.1e-44 181.8 177 56.5
MBI11_g07465_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 4.7e-42 175.3 154 59.7
ECA232G3637 Erigeron canadensis HOM05D004830 ORTHO05D005310 3.1e-41 172.6 178 51.7
Nn3g16476 Nelumbo nucifera HOM05D004830 ORTHO05D005310 5.4e-38 161.8 167 52.1
Nn7g37285 Nelumbo nucifera HOM05D004830 ORTHO05D005310 1.9e-35 153.3 177 44.6
Dinv23140 Davidia involucrata HOM05D004830 ORTHO05D005310 3.3e-35 152.5 115 65.2
SEGI_37187 Sequoiadendron giganteum HOM05D004830 ORTHO05D005310 4.3e-35 152.1 254 36.2
RcHm_v2.0_Chr3g0495501 Rosa chinensis HOM05D004830 ORTHO05D005310 2.2e-31 139.8 213 39.0
TAR633G1142 Trochodendron aralioides HOM05D004830 ORTHO05D005310 1.3e-28 130.6 242 33.9
FAN19G2808 Fragaria x ananassa HOM05D004830 ORTHO05D005310 8.7e-28 127.9 214 35.0
FvH4_1g29410 Fragaria vesca HOM05D004830 ORTHO05D005310 1.5e-27 127.1 214 35.0
ATR0307G071 Amborella trichopoda HOM05D004830 ORTHO05D005310 1.9e-27 126.7 238 33.2
Manes.08G155600 Manihot esculenta HOM05D004830 ORTHO05D005310 7.3e-27 124.8 247 32.4
COL.COLO4_33470 Corchorus olitorius HOM05D004830 ORTHO05D005310 1.6e-26 123.6 250 31.2
TWI34G0970 Tripterygium wilfordii HOM05D004830 ORTHO05D005310 2.1e-26 123.2 264 29.2
Gohir.A11G224212 Gossypium hirsutum HOM05D004830 ORTHO05D005310 2.8e-26 122.9 251 32.3
arahy.Tifrunner.gnm1.ann1.TSAG7F Arachis hypogaea HOM05D004830 ORTHO05D005310 3.6e-26 122.5 210 38.1
Psat3g084280 Pisum sativum HOM05D004830 ORTHO05D005310 4.8e-26 122.1 238 33.2
Gohir.D11G237500 Gossypium hirsutum HOM05D004830 ORTHO05D005310 8.1e-26 121.3 247 32.0
Gorai.007G250900 Gossypium raimondii HOM05D004830 ORTHO05D005310 1.1e-25 120.9 247 32.4
Duzib106G0998 Durio zibethinus HOM05D004830 ORTHO05D005310 1.4e-25 120.6 250 32.0
Thecc.05G236700 Theobroma cacao HOM05D004830 ORTHO05D005310 1.8e-25 120.2 250 32.0
GSVIVG01029897001 Vitis vinifera HOM05D004830 ORTHO05D005310 3.1e-25 119.4 265 30.2
Potri.013G068900 Populus trichocarpa HOM05D004830 ORTHO05D005310 6.9e-25 118.2 245 30.6
Gohir.D03G114700 Gossypium hirsutum HOM05D004830 ORTHO05D005310 9.0e-25 117.9 109 55.0
Lalb_Chr22g0358351 Lupinus albus HOM05D004830 ORTHO05D005310 1.5e-24 117.1 252 32.1
Glyma.19G121200 Glycine max HOM05D004830 ORTHO05D005310 2.6e-24 116.3 229 31.9
MD14G1012800 Malus domestica HOM05D004830 ORTHO05D005310 2.6e-24 116.3 234 31.6
Sabra13G0059800 Salix brachista HOM05D004830 ORTHO05D005310 3.4e-24 115.9 245 30.6
Prupe.1G058500 Prunus persica HOM05D004830 ORTHO05D005310 5.8e-24 115.2 193 36.8
PSO591G0293 Papaver somniferum HOM05D004830 ORTHO05D005310 9.9e-24 114.4 244 32.4
Aqoxy2G00040 Aquilegia oxysepala HOM05D004830 ORTHO05D005310 1.7e-23 113.6 248 29.8
Haze_20367 Corylus avellana HOM05D004830 ORTHO05D005310 2.2e-23 113.2 227 32.2
Dinv14555 Davidia involucrata HOM05D004830 ORTHO05D005310 4.9e-23 112.1 219 34.7
CiPaw.09G053100 Carya illinoinensis HOM05D004830 ORTHO05D005310 6.4e-23 111.7 246 30.1
PSO832G0423 Papaver somniferum HOM05D004830 ORTHO05D005310 8.4e-23 111.3 244 31.1
Lj1g0023159 Lotus japonicus HOM05D004830 ORTHO05D005310 1.2e-21 107.5 248 31.9
Phvul.001G101700 Phaseolus vulgaris HOM05D004830 ORTHO05D005310 1.2e-21 107.5 221 33.9
TPR.G26160 Trifolium pratense HOM05D004830 ORTHO05D005310 1.2e-21 107.5 142 45.8
QL07p015956 Quercus lobata HOM05D004830 ORTHO05D005310 3.5e-21 105.9 247 28.3
MSTRG.6264 Avicennia marina HOM05D004830 ORTHO05D005310 4.6e-21 105.5 258 28.7
Atru.chr2.1607 Acer truncatum HOM05D004830 ORTHO05D005310 1.0e-20 104.4 221 31.7
TPR.G23653 Trifolium pratense HOM05D004830 ORTHO05D005310 2.3e-20 103.2 239 28.5
Migut.J01591 Erythranthe guttata HOM05D004830 ORTHO05D005310 3.0e-20 102.8 247 29.6
Ca_03431_v3 Cicer arietinum L. HOM05D004830 ORTHO05D005310 3.9e-20 102.4 240 29.6
Cpa.g.sc73.42 Carica papaya HOM05D004830 ORTHO05D005310 6.7e-20 101.7 111 42.3
PGR042G2697 Punica granatum HOM05D004830 ORTHO05D005310 8.7e-20 101.3 265 27.2
MBI19_g09302_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 1.9e-19 100.1 104 43.3
MBI19_g15087_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 1.9e-19 100.1 104 43.3
Gohir.D06G037550 Gossypium hirsutum HOM05D004830 ORTHO05D005310 4.3e-19 99.0 126 46.8
VMungo1383G2348 Vigna mungo HOM05D004830 ORTHO05D005310 1.3e-18 97.4 226 33.6
Medtr7g087480 Medicago truncatula HOM05D004830 ORTHO05D005310 2.8e-18 96.3 240 29.2
Ciclev10032343m.g Citrus clementina HOM05D004830 ORTHO05D005310 4.8e-18 95.5 111 42.3
Eucgr.A02163 Eucalyptus grandis HOM05D004830 ORTHO05D005310 6.2e-18 95.1 238 28.2
FAN28G2201 Fragaria x ananassa HOM05D004830 ORTHO05D005310 4.0e-17 92.4 111 42.3
FAN26G1469 Fragaria x ananassa HOM05D004830 ORTHO05D005310 5.3e-17 92.0 111 42.3
Prupe.7G025800 Prunus persica HOM05D004830 ORTHO05D005310 3.4e-16 89.4 159 35.8
Zm00001eb036570 Zea mays HOM05D004830 ORTHO05D005310 2.2e-15 86.7 224 29.9
Psat5g140640 Pisum sativum HOM05D004830 ORTHO05D005310 2.9e-15 86.3 92 45.7
TPR.G26134 Trifolium pratense HOM05D004830 ORTHO05D005310 1.1e-14 84.3 57 68.4
Gohir.D08G162001 Gossypium hirsutum HOM05D004830 ORTHO05D005310 1.4e-14 84.0 67 59.7
RhsimUnG0023100 Rhododendron simsii HOM05D004830 ORTHO05D005310 3.5e-13 79.3 135 32.6
Cfa019887 Carpinus fangiana HOM05D004830 ORTHO05D005310 1.8e-12 77.0 242 26.0
CANSAT78G0784 Cannabis sativa HOM05D004830 ORTHO05D005310 2.5e-11 73.2 187 30.5
HPP92_013617 Vanilla planifolia HOM05D004830 ORTHO05D005310 2.5e-11 73.2 98 39.8
AagrBONN_evm.TU.Sc2ySwM_344.609 Anthoceros agrestis HOM05D004830 ORTHO05D005310 6.2e-10 68.6 127 31.5
TPR.G19401 Trifolium pratense HOM05D000045 ORTHO05D000067 1.3e-07 60.8 64 45.3
EL10Ac7g16221 Beta vulgaris HOM05D000045 ORTHO05D000067 6.5e-07 58.5 64 46.9
Psat0s1748g0080 Pisum sativum HOM05D000045 ORTHO05D000067 6.5e-07 58.5 67 40.3
DCAR_013505 Daucus carota HOM05D004830 ORTHO05D005310 8.4e-07 58.2 194 27.3
Sc12g0000520 Simmondsia chinensis HOM05D000045 ORTHO05D000067 8.4e-07 58.2 71 42.3
CDE04G2621 Ceratophyllum demersum HOM05D000045 ORTHO05D000067 1.4e-06 57.4 65 43.1
PGR119G0427 Punica granatum HOM05D000045 ORTHO05D000067 1.4e-06 57.4 69 44.9
RcHm_v2.0_Chr1g0335301 Rosa chinensis HOM05D000045 ORTHO05D000067 1.4e-06 57.4 67 40.3
ClCG03G014180 Citrullus lanatus HOM05D000045 ORTHO05D000067 2.5e-06 56.6 67 40.3
CANSAT54G2310 Cannabis sativa HOM05D000045 ORTHO05D000067 3.2e-06 56.2 67 40.3
Nitab4.5_0002184g0130 Nicotiana tabacum HOM05D000045 ORTHO05D000067 3.2e-06 56.2 64 45.3
Cpa.g.sc103.69 Carica papaya HOM05D004830 ORTHO05D000067 4.2e-06 55.8 63 44.4
CDE08G0868 Ceratophyllum demersum HOM05D000045 ORTHO05D005310 4.2e-06 55.8 67 41.8
AUR62001611 Chenopodium quinoa HOM05D000045 ORTHO05D000067 4.2e-06 55.8 71 42.3
MELO3C015625.2 Cucumis melo HOM05D000045 ORTHO05D000067 4.2e-06 55.8 69 40.6
CsaV3_1G042070 Cucumis sativus L. HOM05D000045 ORTHO05D000067 4.2e-06 55.8 69 40.6
FvH4_7g06621 Fragaria vesca HOM05D000045 ORTHO05D000067 4.2e-06 55.8 67 40.3
Prupe.5G010000 Prunus persica HOM05D000045 ORTHO05D000067 4.2e-06 55.8 67 40.3
Sopen06g030080 Solanum pennellii HOM05D000045 ORTHO05D000067 4.2e-06 55.8 114 34.2
CAN.G65.213 Capsicum annuum HOM05D000045 ORTHO05D000067 5.5e-06 55.5 64 45.3
QL01p020366 Quercus lobata HOM05D000045 ORTHO05D000067 5.5e-06 55.5 108 35.2
Hund18829 Selenicereus undatus HOM05D000045 ORTHO05D000067 5.5e-06 55.5 71 40.8
Solyc06g073670.4 Solanum lycopersicum HOM05D000045 ORTHO05D000067 5.5e-06 55.5 114 34.2
TAR369G0694 Trochodendron aralioides HOM05D004830 ORTHO05D005310 5.5e-06 55.5 63 44.4
Atru.chr3.3011 Acer truncatum HOM05D000045 ORTHO05D000067 7.1e-06 55.1 64 42.2
Ciclev10018084m.g Citrus clementina HOM05D000045 ORTHO05D000067 7.1e-06 55.1 107 34.6
Dinv32075 Davidia involucrata HOM05D000045 ORTHO05D000067 7.1e-06 55.1 67 41.8
Duzib168G0153 Durio zibethinus HOM05D000045 ORTHO05D000067 7.1e-06 55.1 59 45.8
Gorai.004G227400 Gossypium raimondii HOM05D000045 ORTHO05D000067 7.1e-06 55.1 69 43.5
MD16G1283900 Malus domestica HOM05D000045 ORTHO05D000067 7.1e-06 55.1 67 40.3
Sed0013380 Sechium edule HOM05D000045 ORTHO05D000067 7.1e-06 55.1 69 40.6
GSVIVG01037455001 Vitis vinifera HOM05D000045 ORTHO05D000067 7.1e-06 55.1 60 45.0
CSS0018867 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 9.3e-06 54.7 63 42.9
CSS0049479 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 9.3e-06 54.7 63 42.9
Glyma.20G053500 Glycine max HOM05D000045 ORTHO05D000067 9.3e-06 54.7 60 45.0
Hma1.2p1_0894F.1_g233680 Hydrangea macrophylla HOM05D004830 ORTHO05D005310 9.3e-06 54.7 81 37.0
MBI19_g47438_MAGBIO Magnolia biondii HOM05D004830 ORTHO05D005310 9.3e-06 54.7 59 44.1
MD06G1010400 Malus domestica HOM05D000045 ORTHO05D000067 9.3e-06 54.7 67 40.3
Nitab4.5_0000271g0200 Nicotiana tabacum HOM05D000045 ORTHO05D000067 9.3e-06 54.7 114 35.1


User provided reference genes

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