Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.1e-45 185.3 91 100.0
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.2e-42 175.3 92 95.7
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.4e-36 155.2 91 85.7
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 7.6e-35 150.2 93 83.9
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.8e-34 147.9 92 83.7
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 7.4e-30 133.7 86 81.4
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 9.6e-30 133.3 86 81.4
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 4.9e-26 120.9 92 70.7
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.9e-25 119.0 90 72.2
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 1.6e-16 89.4 94 54.3
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 2.7e-16 88.6 91 58.2
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 3.6e-16 88.2 92 57.6
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 1.0e-15 86.7 89 55.1
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.4e-15 86.3 90 53.3
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 5.1e-15 84.3 86 57.0
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 1.1e-14 83.2 94 53.2
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 1.5e-14 82.8 82 53.7
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 1.5e-14 82.8 91 50.5
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 2.5e-14 82.0 84 53.6
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 2.5e-14 82.0 94 52.1
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 2.5e-14 82.0 94 52.1
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.3e-14 81.6 91 52.7
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 3.3e-14 81.6 90 53.3
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 3.3e-14 81.6 90 52.2
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.3e-14 81.3 91 52.7
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 5.7e-14 80.9 85 56.5
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 5.7e-14 80.9 95 51.6
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 7.4e-14 80.5 94 53.2
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 9.7e-14 80.1 91 51.6
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 9.7e-14 80.1 81 50.6
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.3e-13 79.7 76 61.8
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 1.7e-13 79.3 91 50.5
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 2.8e-13 78.6 93 52.7
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 3.7e-13 78.2 91 52.7
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 4.8e-13 77.8 85 55.3
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 4.8e-13 77.8 85 55.3
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 4.8e-13 77.8 81 53.1
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 4.8e-13 77.8 80 53.8
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 6.3e-13 77.4 94 52.1
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 6.3e-13 77.4 94 52.1
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 6.3e-13 77.4 94 52.1
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.3e-13 77.4 91 50.5
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 6.3e-13 77.4 81 49.4
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.1e-12 76.6 81 56.8
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 1.4e-12 76.3 99 50.5
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 1.4e-12 76.3 81 56.8
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.4e-12 76.3 96 49.0
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.4e-12 76.3 90 50.0
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.8e-12 75.9 70 57.1
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.8e-12 75.9 87 49.4
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 2.4e-12 75.5 94 51.1
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 3.1e-12 75.1 88 51.1
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 3.1e-12 75.1 91 49.5
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 4.1e-12 74.7 81 50.6
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 4.1e-12 74.7 91 50.5
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 4.1e-12 74.7 81 53.1
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 4.1e-12 74.7 81 53.1
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 5.3e-12 74.3 75 54.7
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 6.9e-12 73.9 81 50.6
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 6.9e-12 73.9 81 50.6
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 6.9e-12 73.9 80 52.5
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 9.1e-12 73.6 80 53.8
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 1.2e-11 73.2 87 50.6
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.5e-11 72.8 81 51.9
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 1.5e-11 72.8 73 52.1
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 1.5e-11 72.8 75 54.7
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.5e-11 72.8 80 51.2
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 2.0e-11 72.4 93 52.7
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 2.0e-11 72.4 75 56.0
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 2.6e-11 72.0 89 48.3
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 2.6e-11 72.0 81 48.1
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 2.6e-11 72.0 80 52.5
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 2.6e-11 72.0 80 52.5
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 2.6e-11 72.0 95 45.3
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 3.4e-11 71.6 76 52.6
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 4.5e-11 71.2 84 51.2
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 4.5e-11 71.2 81 54.3
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 5.9e-11 70.9 80 52.5
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 7.7e-11 70.5 85 45.9
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 7.7e-11 70.5 94 50.0
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 7.7e-11 70.5 81 51.9
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 7.7e-11 70.5 85 47.1
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.0e-10 70.1 83 49.4
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.3e-10 69.7 76 47.4
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 2.2e-10 68.9 77 46.8
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 3.8e-10 68.2 85 47.1
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 5.0e-10 67.8 73 52.1
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 6.5e-10 67.4 80 50.0
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 6.5e-10 67.4 76 46.1
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 8.5e-10 67.0 76 48.7
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 8.5e-10 67.0 89 48.3
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 1.4e-09 66.2 85 54.1
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.9e-09 65.9 76 51.3
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 2.5e-09 65.5 84 46.4
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 2.5e-09 65.5 80 46.2
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 3.2e-09 65.1 82 43.9
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 3.2e-09 65.1 81 48.1
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 3.2e-09 65.1 81 48.1
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 4.2e-09 64.7 75 44.0
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 4.2e-09 64.7 80 50.0
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 4.2e-09 64.7 80 48.8
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 4.2e-09 64.7 79 44.3
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 5.5e-09 64.3 79 45.6
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 7.2e-09 63.9 82 45.1
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 1.2e-08 63.2 83 42.2
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 1.2e-08 63.2 82 43.9
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 1.2e-08 63.2 83 42.2
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 1.2e-08 63.2 80 46.2
PGSC0003DMG400022616 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.2e-08 63.2 86 44.2
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 1.6e-08 62.8 76 48.7
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 1.6e-08 62.8 93 41.9
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.6e-08 62.8 82 46.3
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 2.1e-08 62.4 77 45.5
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 2.1e-08 62.4 77 45.5
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 2.1e-08 62.4 85 47.1
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 2.1e-08 62.4 91 39.6
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 2.7e-08 62.0 84 40.5
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 2.7e-08 62.0 82 47.6
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 3.6e-08 61.6 77 45.5
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 3.6e-08 61.6 90 41.1
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 4.7e-08 61.2 75 42.7
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 4.7e-08 61.2 79 43.0
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 6.1e-08 60.8 94 44.7
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 6.1e-08 60.8 94 44.7
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 7.9e-08 60.5 82 41.5
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 1.0e-07 60.1 89 41.6
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 1.4e-07 59.7 75 42.7
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 1.4e-07 59.7 75 42.7
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 2.3e-07 58.9 54 51.9
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 3.0e-07 58.5 54 51.9
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.0e-07 58.5 84 42.9
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 3.9e-07 58.2 83 47.0
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 3.9e-07 58.2 82 41.5
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 3.9e-07 58.2 81 43.2
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 5.1e-07 57.8 76 46.1
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 6.7e-07 57.4 80 42.5
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 8.8e-07 57.0 79 46.8
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 8.8e-07 57.0 79 41.8
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.5e-06 56.2 80 42.5
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 1.5e-06 56.2 73 45.2
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.5e-06 56.2 83 41.0
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 2.0e-06 55.8 75 41.3
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 2.0e-06 55.8 76 44.7
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 2.0e-06 55.8 87 41.4
Rhsim08G0167800 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.0e-06 55.8 66 50.0
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 2.6e-06 55.5 82 41.5
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 2.6e-06 55.5 82 41.5
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 2.6e-06 55.5 82 41.5
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 2.6e-06 55.5 82 41.5
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 2.6e-06 55.5 79 44.3
Rhsim08G0167600 Rhododendron simsii HOM05D003533 ORTHO05D004009 4.4e-06 54.7 66 47.0
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 7.4e-06 53.9 70 41.4
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 9.7e-06 53.5 74 43.2


User provided reference genes

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