Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002050g0150 Nicotiana tabacum HOM05D003211 ORTHO05D003621 4.5e-67 257.7 122 100.0
CAN.G2331.1 Capsicum annuum HOM05D003211 ORTHO05D003621 1.0e-18 97.1 42 95.2
CAN.G2331.3 Capsicum annuum HOM05D003211 ORTHO05D003621 1.0e-18 97.1 42 95.2
Peaxi162Scf00328g00527 Petunia axillaris HOM05D003211 ORTHO05D003621 3.0e-18 95.5 78 59.0
PGSC0003DMG400003585 Solanum tuberosum HOM05D003211 ORTHO05D003621 1.9e-17 92.8 42 90.5
Glyma.06G023000 Glycine max HOM05D003211 ORTHO05D003621 8.1e-16 87.4 79 57.0
VMungo1309G1711 Vigna mungo HOM05D003211 ORTHO05D003621 2.4e-15 85.9 79 53.2
THA.LOC104811427 Tarenaya hassleriana HOM05D003211 ORTHO05D003621 4.0e-15 85.1 79 51.9
Ciclev10000707m.g Citrus clementina HOM05D003211 ORTHO05D003621 5.3e-15 84.7 79 57.0
Nn5g30788 Nelumbo nucifera HOM05D003211 ORTHO05D003621 5.3e-15 84.7 79 55.7
Glyma.04G023067 Glycine max HOM05D003211 ORTHO05D003621 6.9e-15 84.3 79 57.0
Phvul.009G018000 Phaseolus vulgaris HOM05D003211 ORTHO05D003621 6.9e-15 84.3 78 51.3
TWI36G1632 Tripterygium wilfordii HOM05D003211 ORTHO05D003621 1.5e-14 83.2 43 83.7
arahy.Tifrunner.gnm1.ann1.WVQ74Q Arachis hypogaea HOM05D003211 ORTHO05D003621 2.0e-14 82.8 79 54.4
arahy.Tifrunner.gnm1.ann1.YJZ5EZ Arachis hypogaea HOM05D003211 ORTHO05D003621 2.0e-14 82.8 79 54.4
CANSAT25G3811 Cannabis sativa HOM05D003211 ORTHO05D003621 2.0e-14 82.8 79 53.2
Ca_15479_v3 Cicer arietinum L. HOM05D003211 ORTHO05D003621 2.0e-14 82.8 79 53.2
Gohir.A02G083400 Gossypium hirsutum HOM05D003211 ORTHO05D003621 2.0e-14 82.8 79 55.7
Manes.05G144900 Manihot esculenta HOM05D003211 ORTHO05D003621 2.0e-14 82.8 79 55.7
TPR.G38138 Trifolium pratense HOM05D003211 ORTHO05D003621 2.6e-14 82.4 82 48.8
Aqoxy6G02156 Aquilegia oxysepala HOM05D003211 ORTHO05D003621 3.4e-14 82.0 79 54.4
SGA_v2.0_scaffold92G28198 Striga asiatica HOM05D003211 ORTHO05D003621 3.4e-14 82.0 79 54.4
vmacro18428 Vaccinium macrocarpon HOM05D003211 ORTHO05D003621 3.4e-14 82.0 43 79.1
GSVIVG01009956001 Vitis vinifera HOM05D003211 ORTHO05D003621 3.4e-14 82.0 79 55.7
Cpa.g.sc26.295 Carica papaya HOM05D003211 ORTHO05D003621 4.5e-14 81.6 43 79.1
MBI08_g10498_MAGBIO Magnolia biondii HOM05D003211 ORTHO05D003621 4.5e-14 81.6 78 52.6
A06p16250 Brassica napus HOM05D003211 ORTHO05D003621 5.8e-14 81.3 82 50.0
Migut.C00865 Erythranthe guttata HOM05D003211 ORTHO05D003621 5.8e-14 81.3 79 48.1
FAN15G3158 Fragaria x ananassa HOM05D003211 ORTHO05D003621 5.8e-14 81.3 79 54.4
FAN20G1651 Fragaria x ananassa HOM05D003211 ORTHO05D003621 5.8e-14 81.3 79 54.4
FAN27G3060 Fragaria x ananassa HOM05D003211 ORTHO05D003621 5.8e-14 81.3 79 54.4
RcHm_v2.0_Chr6g0303371 Rosa chinensis HOM05D003211 ORTHO05D003621 5.8e-14 81.3 79 54.4
FvH4_2g38130 Fragaria vesca HOM05D003211 ORTHO05D003621 7.6e-14 80.9 79 53.2
Lalb_Chr19g0131471 Lupinus albus HOM05D003211 ORTHO05D003621 7.6e-14 80.9 79 53.2
Nn6g31986 Nelumbo nucifera HOM05D003211 ORTHO05D003621 7.6e-14 80.9 79 55.7
Gohir.D02G098700 Gossypium hirsutum HOM05D003211 ORTHO05D003621 9.9e-14 80.5 79 55.7
Gorai.005G112600 Gossypium raimondii HOM05D003211 ORTHO05D003621 9.9e-14 80.5 79 55.7
Lj1g0003320 Lotus japonicus HOM05D003211 ORTHO05D003621 9.9e-14 80.5 79 51.9
ATR1155G038 Amborella trichopoda HOM05D003211 ORTHO05D003621 1.3e-13 80.1 43 79.1
PGR031G0024 Punica granatum HOM05D003211 ORTHO05D003621 1.3e-13 80.1 79 51.9
Hund16506 Selenicereus undatus HOM05D003211 ORTHO05D003621 1.3e-13 80.1 42 73.8
Aa31LG4G6080 Aethionema arabicum HOM05D003211 ORTHO05D003621 1.7e-13 79.7 79 48.1
Haze_22671 Corylus avellana HOM05D003211 ORTHO05D003621 1.7e-13 79.7 43 76.7
Medtr3g114080 Medicago truncatula HOM05D003211 ORTHO05D003621 1.7e-13 79.7 79 50.6
Sed0006879 Sechium edule HOM05D003211 ORTHO05D003621 1.7e-13 79.7 79 53.2
THA.LOC104809587 Tarenaya hassleriana HOM05D003211 ORTHO05D003621 1.7e-13 79.7 79 51.9
Manes.18G011114 Manihot esculenta HOM05D003211 ORTHO05D003621 2.2e-13 79.3 81 54.3
TWI12G0893 Tripterygium wilfordii HOM05D003211 ORTHO05D003621 2.2e-13 79.3 79 51.9
TAR376G0478 Trochodendron aralioides HOM05D003211 ORTHO05D003621 2.2e-13 79.3 79 50.6
Carub.0001s1964 Capsella rubella HOM05D003211 ORTHO05D003621 2.9e-13 79.0 79 50.6
ClCG05G015550 Citrullus lanatus HOM05D003211 ORTHO05D003621 2.9e-13 79.0 43 79.1
MELO3C003739.2 Cucumis melo HOM05D003211 ORTHO05D003621 2.9e-13 79.0 43 79.1
CsaV3_3G046000 Cucumis sativus L. HOM05D003211 ORTHO05D003621 2.9e-13 79.0 43 79.1
Psat5g012920 Pisum sativum HOM05D003211 ORTHO05D003621 2.9e-13 79.0 79 50.6
Atru.chr13.250 Acer truncatum HOM05D003211 ORTHO05D003621 3.8e-13 78.6 78 48.7
MSTRG.1173 Avicennia marina HOM05D003211 ORTHO05D003621 3.8e-13 78.6 78 52.6
CSS0050063 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 3.8e-13 78.6 43 79.1
CiPaw.02G001000 Carya illinoinensis HOM05D003211 ORTHO05D003621 3.8e-13 78.6 43 76.7
Thecc.08G048400 Theobroma cacao HOM05D003211 ORTHO05D003621 3.8e-13 78.6 79 51.9
AL1G32920 Arabidopsis lyrata HOM05D003211 ORTHO05D003621 4.9e-13 78.2 79 46.8
Cfa013985 Carpinus fangiana HOM05D003211 ORTHO05D003621 4.9e-13 78.2 79 51.9
AT1G20110 Arabidopsis thaliana HOM05D003211 ORTHO05D003621 6.4e-13 77.8 79 46.8
Eucgr.H00950 Eucalyptus grandis HOM05D003211 ORTHO05D003621 6.4e-13 77.8 43 76.7
Eucgr.H00952 Eucalyptus grandis HOM05D003211 ORTHO05D003621 6.4e-13 77.8 43 76.7
Oeu026639.2 Olea europaea HOM05D003211 ORTHO05D003621 6.4e-13 77.8 50 68.0
Actinidia28720 Actinidia chinensis HOM05D003211 ORTHO05D003621 8.4e-13 77.4 43 76.7
CSS0033408 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 8.4e-13 77.4 43 76.7
Dinv39540 Davidia involucrata HOM05D003211 ORTHO05D003621 8.4e-13 77.4 43 74.4
Glyma.17G259400 Glycine max HOM05D003211 ORTHO05D003621 8.4e-13 77.4 77 51.9
Potri.002G018900 Populus trichocarpa HOM05D003211 ORTHO05D003621 8.4e-13 77.4 43 76.7
Rhsim08G0031800 Rhododendron simsii HOM05D003211 ORTHO05D003621 8.4e-13 77.4 43 74.4
CARHR020600 Cardamine hirsuta HOM05D003211 ORTHO05D003621 1.1e-12 77.0 79 49.4
Thhalv10007122m.g Eutrema salsugineum HOM05D003211 ORTHO05D003621 1.1e-12 77.0 79 48.1
MD15G1009800 Malus domestica HOM05D003211 ORTHO05D003621 1.1e-12 77.0 80 51.2
Prupe.1G362200 Prunus persica HOM05D003211 ORTHO05D003621 1.1e-12 77.0 79 49.4
Nitab4.5_0000188g0210 Nicotiana tabacum HOM05D003211 ORTHO05D003621 1.4e-12 76.6 43 81.4
PSO541G4808 Papaver somniferum HOM05D003211 ORTHO05D003621 1.4e-12 76.6 85 47.1
PSO675G6715 Papaver somniferum HOM05D003211 ORTHO05D003621 1.4e-12 76.6 85 47.1
Sp1g17880 Schrenkiella parvula HOM05D003211 ORTHO05D003621 1.4e-12 76.6 79 46.8
BcaC05g25910 Brassica carinata HOM05D003211 ORTHO05D003621 1.9e-12 76.3 79 48.1
BcaC07g39021 Brassica carinata HOM05D003211 ORTHO05D003621 1.9e-12 76.3 79 50.6
C05p18600 Brassica napus HOM05D003211 ORTHO05D003621 1.9e-12 76.3 79 48.1
C08p19950 Brassica napus HOM05D003211 ORTHO05D003621 1.9e-12 76.3 43 72.1
BolC8t49632H Brassica oleracea HOM05D003211 ORTHO05D003621 1.9e-12 76.3 43 72.1
Cc10_g01390 Coffea canephora HOM05D003211 ORTHO05D003621 1.9e-12 76.3 79 46.8
Dinv31872 Davidia involucrata HOM05D003211 ORTHO05D003621 1.9e-12 76.3 47 66.0
QL02p012254 Quercus lobata HOM05D003211 ORTHO05D003621 1.9e-12 76.3 79 50.6
Sed0016624 Sechium edule HOM05D003211 ORTHO05D003621 1.9e-12 76.3 79 49.4
Duzib093G0924 Durio zibethinus HOM05D003211 ORTHO05D003621 2.4e-12 75.9 79 53.2
Nitab4.5_0006505g0010 Nicotiana tabacum HOM05D003211 ORTHO05D003621 2.4e-12 75.9 57 56.1
Sabra02G0015100 Salix brachista HOM05D003211 ORTHO05D003621 2.4e-12 75.9 43 74.4
Solyc02g062000.4 Solanum lycopersicum HOM05D003211 ORTHO05D003621 2.4e-12 75.9 43 81.4
Sopen02g012960 Solanum pennellii HOM05D003211 ORTHO05D003621 2.4e-12 75.9 43 81.4
PGSC0003DMG400023883 Solanum tuberosum HOM05D003211 ORTHO05D003621 2.4e-12 75.9 43 81.4
BolC5t30571H Brassica oleracea HOM05D003211 ORTHO05D003621 3.2e-12 75.5 79 48.1
Lalb_Chr03g0033451 Lupinus albus HOM05D003211 ORTHO05D003621 3.2e-12 75.5 79 49.4
MBI05_g22093_MAGBIO Magnolia biondii HOM05D003211 ORTHO05D003621 3.2e-12 75.5 82 51.2
Duzib116G0338 Durio zibethinus HOM05D003211 ORTHO05D003621 4.2e-12 75.1 79 50.6
Gohir.A05G184800 Gossypium hirsutum HOM05D003211 ORTHO05D003621 4.2e-12 75.1 79 49.4
Gohir.D05G187600 Gossypium hirsutum HOM05D003211 ORTHO05D003621 4.2e-12 75.1 79 49.4
Lsat_1_v5_gn_2_9160 Lactuca sativa HOM05D003211 ORTHO05D003621 4.2e-12 75.1 79 50.6
Lj4A223T32 Lonicera japonica HOM05D003211 ORTHO05D003621 4.2e-12 75.1 43 74.4
Lj4C20G11 Lonicera japonica HOM05D003211 ORTHO05D003621 4.2e-12 75.1 76 48.7
Sc03g0003710 Simmondsia chinensis HOM05D003211 ORTHO05D003621 4.2e-12 75.1 49 67.3
Zm00001eb228270 Zea mays HOM05D003211 ORTHO05D003621 4.2e-12 75.1 79 48.1
BcaB03g12880 Brassica carinata HOM05D003211 ORTHO05D003621 5.4e-12 74.7 43 72.1
A08p29490 Brassica napus HOM05D003211 ORTHO05D003621 5.4e-12 74.7 43 72.1
BraA08t34886Z Brassica rapa HOM05D003211 ORTHO05D003621 5.4e-12 74.7 43 72.1
COL.COLO4_26114 Corchorus olitorius HOM05D003211 ORTHO05D003621 5.4e-12 74.7 79 51.9
Os06g0724100 Oryza sativa ssp. japonica HOM05D003211 ORTHO05D003621 5.4e-12 74.7 79 49.4
arahy.Tifrunner.gnm1.ann1.PQ7T65 Arachis hypogaea HOM05D003211 ORTHO05D003621 7.1e-12 74.3 79 48.1
AUR62013929 Chenopodium quinoa HOM05D003211 ORTHO05D003621 7.1e-12 74.3 49 67.3
AUR62018262 Chenopodium quinoa HOM05D003211 ORTHO05D003621 7.1e-12 74.3 49 67.3
Dinv40121 Davidia involucrata HOM05D003211 ORTHO05D003621 7.1e-12 74.3 43 76.7
Gorai.009G192800 Gossypium raimondii HOM05D003211 ORTHO05D003621 7.1e-12 74.3 79 49.4
Hma1.2p1_0023F.1_g015680 Hydrangea macrophylla HOM05D003211 ORTHO05D003621 7.1e-12 74.3 43 72.1
Hma1.2p1_0869F.1_g230680 Hydrangea macrophylla HOM05D003211 ORTHO05D003621 7.1e-12 74.3 43 74.4
CDE05G2100 Ceratophyllum demersum HOM05D003211 ORTHO05D003621 9.3e-12 73.9 82 43.9
HanXRQChr16g0531491 Helianthus annuus HOM05D003211 ORTHO05D003621 9.3e-12 73.9 43 74.4
Actinidia15442 Actinidia chinensis HOM05D003211 ORTHO05D003621 1.2e-11 73.6 43 72.1
arahy.Tifrunner.gnm1.ann1.R2EEBA Arachis hypogaea HOM05D003211 ORTHO05D003621 1.2e-11 73.6 79 48.1
Nitab4.5_0009349g0010 Nicotiana tabacum HOM05D003211 ORTHO05D003621 1.2e-11 73.6 43 79.1
DCAR_010140 Daucus carota HOM05D003211 ORTHO05D003621 1.6e-11 73.2 43 74.4
MSTRG.2735 Avicennia marina HOM05D003211 ORTHO05D003621 2.1e-11 72.8 78 46.2
CAN.G311.51 Capsicum annuum HOM05D003211 ORTHO05D003621 2.1e-11 72.8 80 46.2
EL10Ac6g15518 Beta vulgaris HOM05D003211 ORTHO05D003621 2.7e-11 72.4 43 69.8
CSS0036463 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 2.7e-11 72.4 43 69.8
CSS0039753 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 2.7e-11 72.4 43 69.8
Peaxi162Scf00860g00435 Petunia axillaris HOM05D003211 ORTHO05D003621 2.7e-11 72.4 82 42.7
QL06p051152 Quercus lobata HOM05D003211 ORTHO05D003621 2.7e-11 72.4 43 69.8
SalBow3G1150 Salvia bowleyana HOM05D003211 ORTHO05D003621 2.7e-11 72.4 49 65.3
SalBow3G3139 Salvia bowleyana HOM05D003211 ORTHO05D003621 2.7e-11 72.4 49 65.3
PGSC0003DMG400009878 Solanum tuberosum HOM05D003211 ORTHO05D003621 2.7e-11 72.4 80 46.2
HanXRQChr06g0183801 Helianthus annuus HOM05D003211 ORTHO05D003621 4.6e-11 71.6 43 67.4
Hma1.2p1_2620F.1_g325570 Hydrangea macrophylla HOM05D003211 ORTHO05D003621 4.6e-11 71.6 43 72.1
unitig_26.g9886 Utricularia gibba HOM05D003211 ORTHO05D003621 4.6e-11 71.6 80 50.0
HanXRQChr14g0429841 Helianthus annuus HOM05D003211 ORTHO05D003621 6.0e-11 71.2 79 49.4
TAR381G1330 Trochodendron aralioides HOM05D003211 ORTHO05D003621 6.0e-11 71.2 80 48.8
Ah.11g040010 Amaranthus hybridus HOM05D003211 ORTHO05D003621 7.9e-11 70.9 79 49.4
Solyc04g081750.4 Solanum lycopersicum HOM05D003211 ORTHO05D003621 7.9e-11 70.9 79 45.6
Sopen04g035380 Solanum pennellii HOM05D003211 ORTHO05D003621 7.9e-11 70.9 79 45.6
Ah.03g149170 Amaranthus hybridus HOM05D003211 ORTHO05D003621 1.0e-10 70.5 43 65.1
EL10Ac1g02154 Beta vulgaris HOM05D003211 ORTHO05D003621 1.3e-10 70.1 79 46.8
Eucgr.H00938 Eucalyptus grandis HOM05D003211 ORTHO05D003621 1.3e-10 70.1 79 50.6
SHI30908 Sapria himalayana HOM05D003211 ORTHO05D003621 1.3e-10 70.1 93 43.0
Hund01677 Selenicereus undatus HOM05D003211 ORTHO05D003621 1.8e-10 69.7 79 46.8
vmacro07568 Vaccinium macrocarpon HOM05D003211 ORTHO05D003621 1.8e-10 69.7 40 75.0
MD08G1009900 Malus domestica HOM05D003211 ORTHO05D003621 2.3e-10 69.3 43 69.8
SGA_v2.0_scaffold108G31000 Striga asiatica HOM05D003211 ORTHO05D003621 2.3e-10 69.3 43 67.4
HPP92_012942 Vanilla planifolia HOM05D003211 ORTHO05D003621 2.3e-10 69.3 42 71.4
BcaNung03340 Brassica carinata HOM05D003211 ORTHO05D003621 3.0e-10 68.9 35 74.3
Rhsim06G0018400 Rhododendron simsii HOM05D003211 ORTHO05D003621 3.0e-10 68.9 40 75.0
SEGI_01879 Sequoiadendron giganteum HOM05D003211 ORTHO05D003621 3.9e-10 68.6 78 48.7
ECA246G2864 Erigeron canadensis HOM05D003211 ORTHO05D003621 6.7e-10 67.8 38 76.3
Potri.005G242700 Populus trichocarpa HOM05D003211 ORTHO05D003621 6.7e-10 67.8 43 69.8
Migut.H02184 Erythranthe guttata HOM05D003211 ORTHO05D003621 1.1e-09 67.0 49 61.2
Lsat_1_v5_gn_0_42440 Lactuca sativa HOM05D003211 ORTHO05D003621 1.1e-09 67.0 38 73.7
Lsat_1_v5_gn_3_72021 Lactuca sativa HOM05D003211 ORTHO05D003621 1.1e-09 67.0 38 73.7
Sabra05G0188000 Salix brachista HOM05D003211 ORTHO05D003621 1.1e-09 67.0 43 69.8
HPP92_002479 Vanilla planifolia HOM05D003211 ORTHO05D003621 1.1e-09 67.0 43 67.4
Os07g0573300 Oryza sativa ssp. japonica HOM05D003211 ORTHO05D003621 1.9e-09 66.2 80 45.0
CDE05G2134 Ceratophyllum demersum HOM05D003211 ORTHO05D003621 4.3e-09 65.1 79 40.5
Lsat_1_v5_gn_5_63960 Lactuca sativa HOM05D003211 ORTHO05D003621 4.3e-09 65.1 44 68.2
Peaxi162Scf00439g00048 Petunia axillaris HOM05D003211 ORTHO05D003621 5.6e-09 64.7 52 61.5
HPP92_002464 Vanilla planifolia HOM05D003211 ORTHO05D003621 5.6e-09 64.7 43 65.1
ECA238G1606 Erigeron canadensis HOM05D003211 ORTHO05D003621 9.6e-09 63.9 79 44.3
Cc07_g11110 Coffea canephora HOM05D003211 ORTHO05D003621 2.8e-08 62.4 79 43.0
SMO358G0360 Selaginella moellendorffii HOM05D003211 ORTHO05D003621 4.8e-08 61.6 39 64.1
Zm00001eb325110 Zea mays HOM05D003211 ORTHO05D003621 8.1e-08 60.8 42 57.1
Actinidia27236 Actinidia chinensis HOM05D003211 ORTHO05D003621 4.0e-07 58.5 37 67.6
Mapoly0053s0010 Marchantia polymorpha HOM05D003211 ORTHO05D003621 6.9e-07 57.8 40 67.5


User provided reference genes

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