Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1689.9 870 100.0
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1553.1 848 94.9
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 0.0e+00 1473.8 848 90.1
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 0.0e+00 1471.4 849 90.2
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 0.0e+00 1471.1 848 90.1
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 0.0e+00 1466.1 848 89.7
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 0.0e+00 1464.9 848 89.7
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1161.4 853 70.3
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1161.0 853 70.2
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1130.9 850 68.5
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1124.0 855 68.2
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 0.0e+00 1121.7 850 69.8
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1120.1 854 68.4
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1108.2 879 66.7
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1107.4 850 68.5
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1095.1 856 66.4
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1094.0 853 67.5
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1087.8 855 66.5
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 0.0e+00 1084.7 853 67.9
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1078.5 846 65.8
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1075.5 810 68.6
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 6.0e-312 1073.9 850 66.1
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 3.5e-310 1068.1 856 66.8
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 7.7e-310 1067.0 848 65.3
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 2.2e-309 1065.4 861 65.0
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 2.2e-309 1065.4 851 66.6
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 8.5e-309 1063.5 856 66.4
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 1.9e-308 1062.4 819 68.0
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 9.4e-308 1060.1 830 67.6
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 7.9e-307 1057.0 861 64.6
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 1.5e-305 1052.7 854 64.6
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 5.7e-305 1050.8 851 65.1
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 7.0e-303 1043.9 851 64.0
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 9.1e-303 1043.5 851 63.9
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 4.5e-302 1041.2 804 68.0
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 3.8e-301 1038.1 856 65.3
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 6.5e-301 1037.3 848 64.3
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 2.5e-300 1035.4 853 64.1
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 4.2e-300 1034.6 850 64.6
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 5.5e-300 1034.2 853 64.1
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 7.2e-300 1033.9 846 64.3
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.2e-299 1033.1 851 63.7
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 1.2e-299 1033.1 851 64.5
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 2.7e-299 1031.9 854 64.1
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 8.0e-299 1030.4 853 64.4
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 8.8e-298 1026.9 862 63.6
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 2.0e-297 1025.8 851 63.3
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 7.5e-297 1023.8 854 62.6
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 5.3e-295 1017.7 858 62.9
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 1.3e-293 1013.1 867 62.5
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 9.4e-292 1006.9 853 63.5
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 5.2e-290 1001.1 851 61.5
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 5.2e-290 1001.1 848 62.9
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 1.5e-289 999.6 849 62.7
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 2.6e-289 998.8 852 60.8
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 5.7e-289 997.7 848 62.0
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 1.3e-288 996.5 853 61.3
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 1.8e-287 992.6 847 62.2
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 1.8e-287 992.6 858 62.5
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 1.6e-286 989.6 857 60.8
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 6.5e-285 984.2 850 61.4
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 3.0e-282 975.3 856 61.9
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 8.8e-282 973.8 853 61.3
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 1.5e-281 973.0 859 61.7
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 5.7e-281 971.1 854 61.1
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 1.3e-280 969.9 855 61.2
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 2.8e-280 968.8 856 61.6
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 2.8e-280 968.8 806 64.5
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 1.8e-279 966.1 855 61.6
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 1.6e-278 963.0 859 61.1
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 3.5e-278 961.8 855 60.1
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 2.9e-277 958.7 854 60.2
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 2.9e-277 958.7 806 63.0
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 8.6e-277 957.2 897 58.1
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.5e-276 956.4 848 61.0
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 2.5e-276 955.7 850 60.9
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 2.1e-275 952.6 852 59.5
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 1.4e-274 949.9 856 61.1
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 1.8e-274 949.5 859 59.5
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 4.0e-274 948.3 868 60.4
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 1.5e-273 946.4 864 60.1
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 3.4e-273 945.3 870 60.2
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 3.9e-269 931.8 848 60.3
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 1.4e-266 923.3 849 57.1
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 7.5e-265 917.5 826 61.1
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 1.9e-263 912.9 850 58.9
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 1.9e-263 912.9 852 57.0
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 1.9e-260 902.9 820 60.4
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 3.6e-259 898.7 752 64.0
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 4.9e-256 888.3 851 57.2
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 5.4e-255 884.8 750 62.4
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 1.8e-234 816.6 850 52.6
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 1.6e-230 803.5 646 65.5
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 2.7e-230 802.7 855 51.6
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 4.8e-227 792.0 690 63.2
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 3.4e-225 785.8 841 53.9
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 3.9e-221 772.3 811 53.8
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 3.0e-197 693.0 754 51.1
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 2.4e-170 603.6 733 48.0
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.1e-167 594.7 524 61.3
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 4.0e-165 586.3 435 68.3
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 6.2e-134 482.6 859 36.7
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 2.4e-133 480.7 824 36.9
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 6.6e-128 462.6 845 36.1
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 1.0e-96 359.0 992 30.1
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 1.3e-96 358.6 322 59.3
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 2.3e-48 198.4 212 53.3
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.8e-24 119.0 97 62.9
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 2.1e-20 105.5 56 94.6
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 6.0e-20 104.0 56 89.3
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 9.5e-18 96.7 81 63.0
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 2.0e-15 89.0 919 20.1
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 2.0e-15 89.0 585 23.4
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 1.6e-12 79.3 57 66.7
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 2.8e-09 68.6 49 65.3
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 3.6e-09 68.2 49 67.3
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 8.1e-09 67.0 99 45.5
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 1.2e-07 63.2 50 58.0
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 2.6e-07 62.0 106 41.5
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 2.6e-07 62.0 47 61.7
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 3.4e-07 61.6 56 48.2
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 1.3e-06 59.7 48 58.3
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 1.7e-06 59.3 50 58.0
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 6.4e-06 57.4 593 22.3


User provided reference genes

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