Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.6e-220 767.3 387 100.0
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 1.9e-143 513.1 491 60.7
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 9.4e-143 510.8 491 60.7
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 3.8e-136 488.8 489 59.9
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 2.0e-132 476.5 505 57.2
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 4.4e-132 475.3 491 57.6
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 3.5e-121 439.1 498 53.0
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 1.4e-117 427.2 487 52.0
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 1.4e-117 427.2 492 51.4
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.4e-114 416.4 493 51.9
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 2.3e-112 409.8 498 51.8
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 8.6e-112 407.9 490 49.6
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 1.9e-111 406.8 490 49.4
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.5e-111 406.4 490 49.6
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 1.4e-109 400.6 496 50.0
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 6.8e-109 398.3 490 48.8
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 3.4e-108 396.0 491 47.5
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 7.5e-108 394.8 491 49.3
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 6.4e-107 391.7 494 47.8
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 6.4e-107 391.7 490 49.0
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 8.3e-107 391.3 497 47.9
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 8.3e-107 391.3 501 48.3
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 1.4e-106 390.6 490 48.6
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 3.2e-106 389.4 469 49.3
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 1.6e-105 387.1 495 47.9
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 4.6e-105 385.6 491 47.5
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.0e-104 384.4 493 47.5
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 8.6e-104 381.3 495 47.5
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 1.9e-103 380.2 494 47.4
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 5.6e-103 378.6 467 48.4
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 9.5e-103 377.9 495 47.1
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 9.5e-103 377.9 494 48.4
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 2.8e-102 376.3 489 45.6
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 4.7e-102 375.6 501 46.9
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.7e-102 375.6 492 48.8
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 6.2e-102 375.2 490 46.3
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.1e-101 372.9 492 49.0
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 5.2e-101 372.1 493 48.3
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 6.8e-101 371.7 489 46.6
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 2.0e-100 370.2 498 46.2
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 2.0e-100 370.2 550 43.6
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 3.4e-100 369.4 494 44.9
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 4.4e-100 369.0 494 46.6
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 7.6e-100 368.2 492 48.6
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.7e-99 367.1 488 44.5
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.2e-99 366.7 498 45.2
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.8e-99 365.9 492 48.2
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 4.9e-99 365.5 492 45.5
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.1e-98 364.4 511 44.4
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.9e-98 363.6 189 98.9
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.4e-98 363.2 492 47.0
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 1.6e-97 360.5 493 45.6
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 2.1e-97 360.1 488 45.9
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 6.0e-97 358.6 498 46.8
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 1.3e-96 357.5 475 46.1
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 3.0e-96 356.3 490 45.9
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 5.1e-96 355.5 492 45.3
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 3.3e-95 352.8 393 52.7
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.6e-95 352.1 455 52.3
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 2.1e-94 350.1 503 43.9
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 4.7e-94 349.0 489 44.2
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.1e-93 347.8 496 43.3
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 2.4e-93 346.7 494 44.7
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 5.3e-93 345.5 490 45.5
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 9.0e-93 344.7 512 41.4
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.2e-92 344.4 499 43.3
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 2.6e-92 343.2 492 44.9
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 4.4e-92 342.4 483 44.7
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 1.3e-91 340.9 450 47.1
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 3.8e-91 339.3 463 45.8
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 1.2e-89 334.3 508 42.7
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 3.3e-87 326.2 538 41.3
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 2.4e-85 320.1 564 39.7
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 9.9e-84 314.7 430 44.9
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 9.9e-84 314.7 500 41.6
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 3.8e-83 312.8 515 41.4
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 7.1e-82 308.5 188 81.4
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 2.1e-81 307.0 509 39.3
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 4.6e-81 305.8 425 43.8
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.5e-79 300.8 504 39.7
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 9.6e-79 298.1 504 39.7
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.1e-77 294.7 196 76.0
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 2.4e-77 293.5 500 38.2
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 4.0e-77 292.7 497 38.0
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 4.0e-77 292.7 497 38.0
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 4.0e-77 292.7 497 38.0
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 6.9e-77 292.0 504 37.9
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 9.0e-77 291.6 188 76.6
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.2e-76 291.2 485 38.4
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.2e-76 291.2 485 38.4
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 2.6e-76 290.0 188 77.7
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 3.4e-76 289.7 494 37.7
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 3.4e-76 289.7 188 78.2
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 1.7e-75 287.3 492 37.6
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 7.1e-74 282.0 515 36.5
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 4.6e-73 279.3 533 37.0
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.8e-72 277.3 403 43.7
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.2e-66 256.5 190 68.9
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 1.3e-64 251.1 461 38.6
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.6e-60 236.9 189 69.3
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 2.0e-39 167.5 410 33.4
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.5e-34 150.6 144 60.4
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 1.2e-33 148.3 179 47.5
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 3.7e-30 136.7 516 26.7
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.1e-29 135.2 147 51.0
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 3.5e-28 130.2 157 51.6
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 5.9e-28 129.4 492 24.4
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 2.5e-26 124.0 134 52.2
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.2e-25 121.7 157 49.0
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 4.7e-25 119.8 156 48.1
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 9.8e-23 112.1 111 60.4
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.6e-20 104.8 121 50.4
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.0e-19 102.1 233 33.0
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 5.0e-19 99.8 523 23.5
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.5e-18 98.2 84 48.8
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 7.2e-18 95.9 142 39.4
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 1.2e-17 95.1 164 37.8
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.6e-17 93.6 169 37.3
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 4.7e-17 93.2 388 30.2
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.4e-13 81.6 81 54.3
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 1.2e-09 68.6 41 78.0
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 2.8e-09 67.4 71 47.9
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 6.1e-09 66.2 132 33.3
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.4e-08 65.1 41 75.6


User provided reference genes

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