Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 3.7e-274 947.6 477 100.0
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.7e-263 912.1 495 93.7
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 3.2e-233 811.6 477 87.6
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 2.3e-231 805.4 476 86.6
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.1e-230 803.1 476 86.3
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 4.3e-230 801.2 478 84.9
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 1.2e-227 793.1 476 85.9
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.9e-201 706.1 481 72.8
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 3.6e-200 701.8 474 74.3
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 2.2e-197 692.6 479 71.8
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 4.8e-197 691.4 491 70.7
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 6.3e-197 691.0 485 71.5
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.4e-196 689.9 474 71.7
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 4.1e-196 688.3 475 71.6
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 5.3e-196 688.0 474 72.2
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.6e-195 685.6 474 71.7
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 4.5e-195 684.9 482 70.3
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.0e-194 683.7 494 69.8
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.3e-194 683.3 479 69.7
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.3e-194 683.3 479 69.7
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 1.3e-194 683.3 474 71.7
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 3.8e-194 681.8 480 71.0
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 6.5e-194 681.0 480 70.6
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.1e-193 680.2 474 70.9
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 3.2e-193 678.7 481 69.4
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 4.2e-193 678.3 476 71.6
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 2.1e-192 676.0 482 69.1
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 3.6e-192 675.2 481 69.0
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.7e-192 674.9 482 70.3
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 4.7e-192 674.9 481 70.1
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 6.1e-192 674.5 485 69.5
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.0e-191 673.7 480 70.4
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 2.3e-191 672.5 482 68.5
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 5.1e-191 671.4 480 68.5
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.1e-190 670.2 478 69.5
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 1.1e-190 670.2 481 70.1
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.5e-190 669.8 483 68.5
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.5e-190 669.8 481 68.0
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 2.6e-190 669.1 477 69.8
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.3e-190 668.7 476 69.3
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 4.4e-190 668.3 507 65.9
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 7.4e-190 667.5 478 68.6
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 1.3e-189 666.8 481 68.2
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 3.7e-189 665.2 481 68.8
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 3.7e-189 665.2 474 71.1
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.1e-188 663.7 476 68.9
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.1e-188 663.7 483 67.5
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 5.3e-188 661.4 481 66.5
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.2e-187 660.2 477 70.9
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 4.5e-187 658.3 485 67.6
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 5.9e-187 657.9 490 68.2
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 5.9e-187 657.9 482 68.3
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.7e-186 656.4 486 67.1
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 2.9e-186 655.6 484 66.3
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 3.8e-186 655.2 490 68.0
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.9e-185 652.9 476 67.2
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 2.5e-185 652.5 502 66.5
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 3.2e-185 652.1 483 68.3
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 9.4e-185 650.6 474 68.8
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.6e-184 649.8 478 66.5
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.0e-183 647.1 481 66.1
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.4e-183 646.7 482 66.0
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.3e-183 646.0 482 66.2
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 4.0e-183 645.2 482 66.4
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 4.0e-183 645.2 484 65.7
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 5.2e-183 644.8 484 65.7
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 2.6e-182 642.5 481 66.5
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 9.7e-182 640.6 482 65.6
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 2.8e-181 639.0 482 63.9
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 6.3e-181 637.9 482 65.6
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 8.2e-181 637.5 484 65.3
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 8.2e-181 637.5 485 66.0
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 1.4e-180 636.7 482 65.1
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 2.4e-180 636.0 481 64.7
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 7.0e-180 634.4 478 66.1
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 7.0e-180 634.4 480 65.8
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-179 632.9 519 63.2
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.7e-178 629.8 505 63.8
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 2.2e-178 629.4 475 65.5
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 5.0e-178 628.2 475 65.5
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.1e-177 627.1 478 65.7
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.5e-177 626.7 488 64.5
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 2.5e-177 625.9 475 64.6
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 2.1e-176 622.9 475 65.3
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 6.1e-176 621.3 458 66.8
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 1.0e-175 620.5 488 63.9
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.8e-175 619.8 475 64.8
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.3e-175 619.4 475 65.1
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 3.0e-175 619.0 427 69.1
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 4.0e-175 618.6 507 60.6
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 4.0e-175 618.6 474 64.1
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 8.8e-175 617.5 475 64.8
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 8.8e-175 617.5 475 64.8
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.5e-174 616.7 475 64.4
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 2.8e-173 612.5 460 68.0
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 4.8e-173 611.7 479 63.9
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 4.8e-173 611.7 474 63.1
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 9.1e-172 607.4 499 61.9
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.6e-171 606.7 486 61.3
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.7e-170 603.2 415 69.6
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.7e-170 603.2 483 62.1
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 9.4e-169 597.4 494 60.3
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.5e-166 590.1 573 54.1
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.6e-166 589.3 430 66.7
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.8e-164 583.2 553 58.6
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.3e-162 576.2 415 68.7
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 5.0e-162 575.1 430 66.3
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 6.8e-159 564.7 516 57.6
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 5.7e-158 561.6 476 59.7
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 5.9e-155 551.6 483 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.0e-154 549.3 486 56.6
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 3.9e-154 548.9 471 58.4
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 7.5e-150 534.6 419 64.7
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 2.9e-149 532.7 486 55.8
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 6.6e-146 521.5 478 53.6
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.3e-138 497.3 471 56.3
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.2e-136 490.7 357 68.1
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 3.1e-135 486.1 412 59.7
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 5.3e-119 432.2 482 49.6
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 5.9e-94 349.0 598 37.5
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 9.7e-89 331.6 257 65.8
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 2.5e-84 317.0 523 38.8
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 5.5e-84 315.8 215 74.9
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 2.7e-83 313.5 253 56.9
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 3.0e-74 283.5 365 46.6
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.3e-66 257.3 185 75.1
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.0e-66 256.9 182 63.2
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 3.0e-66 256.9 545 33.2
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 9.1e-63 245.4 210 55.2
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 5.5e-60 236.1 255 49.0
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.3e-58 230.7 156 66.7
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.7e-53 214.5 241 46.1
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 4.0e-50 203.4 409 35.2
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.8e-48 197.2 472 31.8
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 2.9e-40 170.6 162 51.2
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 5.9e-38 162.9 486 27.8
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.3e-37 161.8 379 32.5
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 9.5e-36 155.6 446 27.4
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 6.8e-34 149.4 201 40.8
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.8e-27 127.5 212 39.6
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 5.6e-20 103.2 184 39.7
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 7.6e-17 92.8 133 39.1
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 6.6e-13 79.7 68 64.7
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.9e-12 78.2 68 64.7
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 5.6e-12 76.6 67 59.7
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 3.1e-10 70.9 71 49.3
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 5.2e-10 70.1 70 54.3
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 2.0e-09 68.2 69 53.6
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 9.9e-09 65.9 51 52.9
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 3.2e-07 60.8 70 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.2e-06 58.9 86 46.5


User provided reference genes

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