Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.6e-102 374.0 186 100.0
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.8e-98 360.9 186 96.8
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 7.1e-88 327.4 186 87.1
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 7.9e-87 323.9 184 88.0
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 3.9e-78 295.0 173 80.3
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 3.3e-77 292.0 188 76.1
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.6e-77 291.2 181 75.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.3e-76 290.0 172 81.4
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.4e-75 285.8 174 76.4
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.4e-75 285.8 187 75.9
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 4.0e-75 285.0 187 75.9
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 4.0e-75 285.0 187 75.9
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.5e-74 283.1 187 75.4
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.5e-74 283.1 173 78.6
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 3.4e-74 282.0 188 72.9
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.4e-74 282.0 173 76.3
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 4.5e-74 281.6 173 78.0
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 5.8e-74 281.2 173 75.1
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.3e-73 280.0 173 76.9
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.2e-73 279.3 173 75.1
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 2.9e-73 278.9 173 75.1
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.9e-73 278.9 173 75.1
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.8e-73 278.5 173 76.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 4.9e-73 278.1 182 72.0
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.9e-73 278.1 174 73.6
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.1e-72 276.9 182 72.5
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.5e-72 275.8 175 73.1
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.2e-72 275.4 173 76.3
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.2e-72 275.4 173 76.3
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 5.5e-72 274.6 173 73.4
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 5.5e-72 274.6 175 72.6
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 5.5e-72 274.6 175 73.7
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 5.5e-72 274.6 173 74.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 7.1e-72 274.2 175 73.7
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.2e-71 273.5 173 74.0
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.6e-71 273.1 172 75.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 2.1e-71 272.7 173 71.7
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 3.5e-71 271.9 174 74.7
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 4.6e-71 271.6 173 74.0
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.6e-71 271.6 173 72.3
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 6.0e-71 271.2 175 72.6
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 7.9e-71 270.8 172 74.4
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 7.9e-71 270.8 172 74.4
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.0e-70 270.4 172 74.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.0e-70 270.4 172 74.4
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.0e-70 270.4 175 71.4
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.3e-70 270.0 173 73.4
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.3e-70 270.0 182 70.9
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 3.0e-70 268.9 165 78.8
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 3.0e-70 268.9 173 71.7
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 5.1e-70 268.1 173 72.8
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 6.7e-70 267.7 175 72.6
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 6.7e-70 267.7 175 73.7
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 8.7e-70 267.3 172 74.4
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 8.7e-70 267.3 172 73.8
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.7e-70 267.3 165 75.2
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.1e-69 266.9 172 73.8
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.1e-69 266.9 172 73.8
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.1e-69 266.9 173 72.3
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.5e-69 266.5 175 71.4
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 3.3e-69 265.4 172 73.3
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 3.3e-69 265.4 172 73.8
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 3.3e-69 265.4 189 68.3
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.3e-69 265.4 171 74.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 5.7e-69 264.6 175 68.6
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 7.4e-69 264.2 172 73.3
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 9.7e-69 263.8 171 73.1
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 9.7e-69 263.8 173 72.3
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.3e-68 263.5 173 70.5
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.3e-68 263.5 173 70.5
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 2.8e-68 262.3 158 78.5
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.7e-68 261.9 173 69.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 4.8e-68 261.5 173 70.5
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 6.3e-68 261.2 173 71.7
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 6.3e-68 261.2 178 68.5
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.8e-67 259.6 179 68.7
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.8e-67 259.6 162 76.5
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 3.1e-67 258.8 173 70.5
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 5.3e-67 258.1 172 69.2
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 9.0e-67 257.3 173 71.1
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.5e-66 256.5 168 72.6
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 3.4e-66 255.4 188 67.6
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.4e-66 255.4 182 68.7
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 3.4e-66 255.4 167 71.9
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 4.5e-66 255.0 191 66.0
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 7.7e-66 254.2 173 69.4
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.7e-65 253.1 180 67.8
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 2.2e-65 252.7 170 72.4
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 3.8e-65 251.9 164 72.6
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 6.5e-65 251.1 173 68.8
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 6.5e-65 251.1 174 67.8
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.4e-64 250.0 190 66.3
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.9e-64 249.6 180 66.7
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 2.5e-64 249.2 164 72.0
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 2.5e-64 249.2 182 65.9
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.2e-64 248.8 165 70.3
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.2e-64 248.8 165 70.3
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 3.2e-64 248.8 170 68.2
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 5.5e-64 248.1 169 68.0
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 5.5e-64 248.1 174 68.4
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 9.4e-64 247.3 164 71.3
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 9.4e-64 247.3 168 68.5
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 7.9e-63 244.2 164 70.7
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 7.9e-63 244.2 169 66.9
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 7.9e-63 244.2 170 68.8
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.4e-62 243.4 171 68.4
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.4e-62 243.4 174 67.8
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 6.7e-62 241.1 134 82.8
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.1e-61 240.4 161 70.2
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.5e-61 240.0 166 68.1
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 1.5e-61 240.0 173 65.9
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.0e-61 239.6 181 65.2
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.0e-61 239.6 169 66.3
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.0e-61 239.6 169 68.0
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.3e-61 238.8 170 68.2
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 5.7e-61 238.0 171 66.7
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.7e-60 235.3 163 66.9
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 4.8e-60 235.0 169 63.9
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 6.3e-60 234.6 171 66.7
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.3e-60 234.6 176 64.2
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 6.3e-60 234.6 169 66.3
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 6.3e-60 234.6 171 65.5
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.4e-59 233.4 175 64.6
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.1e-59 232.3 159 67.3
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 3.1e-59 232.3 169 64.5
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 3.1e-59 232.3 173 64.2
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 5.3e-59 231.5 175 66.9
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 6.9e-59 231.1 164 65.2
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.2e-58 230.3 169 64.5
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 1.2e-58 230.3 173 68.8
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 5.0e-57 224.9 169 63.9
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.5e-57 224.6 165 67.3
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 3.2e-56 222.2 134 76.1
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 4.2e-56 221.9 168 65.5
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.2e-56 221.9 168 65.5
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.6e-55 219.9 176 61.4
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-55 219.5 165 66.1
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.1e-55 218.0 139 74.8
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.3e-54 216.1 164 63.4
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 3.9e-54 215.3 159 62.3
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.8e-52 209.1 179 60.9
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 3.7e-52 208.8 160 60.6
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 8.2e-52 207.6 166 65.1
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.1e-51 207.2 165 60.6
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.6e-50 202.6 187 58.3
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.7e-50 201.1 175 57.1
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.7e-49 199.9 159 59.7
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 2.2e-49 199.5 160 61.2
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.0e-49 198.4 137 71.5
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 5.5e-48 194.9 143 66.4
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.2e-47 193.7 159 57.9
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.6e-47 193.4 129 73.6
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 6.1e-47 191.4 142 62.0
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.0e-46 189.1 135 69.6
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.4e-45 185.3 162 56.8
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.7e-44 183.3 169 55.0
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.7e-44 183.3 131 67.2
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 8.2e-44 181.0 162 59.3
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 2.4e-43 179.5 166 54.8
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.0e-41 174.1 179 51.4
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.1e-40 170.6 179 50.3
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.6e-39 166.8 129 62.0
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.5e-37 160.2 94 80.9
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 9.7e-37 157.5 116 67.2
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.9e-32 143.3 90 73.3
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.5e-32 142.9 89 70.8
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 5.5e-32 141.7 92 70.7
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.0e-30 135.6 99 65.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.0e-30 135.6 155 41.9
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 9.5e-24 114.4 182 39.0
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.8e-20 102.8 73 61.6
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.6e-17 91.3 79 57.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 5.6e-16 88.6 52 80.8
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.5e-13 78.2 55 69.1
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 1.7e-12 77.0 183 32.2
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 2.0e-10 70.1 36 83.3
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.3e-09 67.4 36 80.6
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 1.3e-09 67.4 81 43.2
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.9e-09 65.9 122 35.2
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 4.3e-08 62.4 177 30.5
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-06 57.0 39 64.1


User provided reference genes

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