Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 4462.9 2457 100.0
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 4229.1 2462 95.2
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 3636.3 2461 82.7
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 3581.2 2460 82.8
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 3499.5 2600 77.3
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 3449.1 2338 83.1
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2313.5 2521 59.3
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2161.0 2507 56.0
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 2111.6 2497 54.7
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2103.2 2510 55.1
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2081.6 2538 53.9
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2063.1 2536 53.2
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2045.0 2510 53.1
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2044.6 2520 53.8
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2013.8 2511 53.7
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1999.2 2534 53.7
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1981.5 2525 52.5
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1972.6 2545 51.6
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1966.4 2514 52.7
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1962.6 2525 52.3
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1962.2 2529 52.4
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1955.3 2562 51.0
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1949.1 2515 51.1
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1947.2 2510 52.2
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1937.5 2191 57.9
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1936.0 2514 53.5
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1927.9 2509 51.3
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1918.7 2511 51.5
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1917.5 2546 51.6
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1873.2 2465 51.4
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1864.4 2527 52.3
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1862.8 2496 51.5
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1860.1 2505 52.0
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1858.6 2517 51.3
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1858.2 2527 50.6
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1857.8 2520 50.6
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1854.0 2521 51.1
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1849.7 2544 51.2
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1848.2 2581 50.1
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1846.2 2519 50.8
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1843.2 2024 58.5
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1838.5 2520 50.9
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1835.5 2588 49.7
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1825.8 2587 49.5
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1823.1 2505 50.3
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1818.5 2579 49.7
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1810.4 2526 49.7
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1781.5 2489 50.0
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1767.7 2523 48.6
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1759.2 2505 49.9
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1744.2 2524 48.8
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1739.9 2509 48.3
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1729.9 2498 49.8
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1725.3 2525 48.8
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1723.4 2506 48.8
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1713.0 2522 48.9
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1692.9 2529 48.4
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1684.1 2516 48.6
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1678.7 2528 48.2
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1676.4 2506 48.0
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1675.6 2502 47.9
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1668.3 2498 48.0
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1663.7 2518 47.9
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1661.4 2319 51.2
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1650.6 2502 47.2
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1638.2 2532 46.4
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1635.9 2511 47.6
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1630.9 2532 48.2
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1624.4 2500 47.7
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1612.0 2439 46.5
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1601.6 2470 47.3
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1600.5 2576 44.4
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1600.1 2503 46.5
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1598.2 2572 47.3
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1591.6 2363 47.7
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1583.9 2513 47.2
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1545.4 2507 46.2
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1543.5 2506 46.3
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1525.4 2498 45.4
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1494.6 2478 46.1
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1430.2 2490 44.6
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1409.0 2512 44.1
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1405.6 2514 44.1
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1402.5 2502 44.0
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1343.6 2493 43.0
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1341.3 2531 43.6
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1328.2 1738 51.4
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1327.4 2625 39.8
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1320.1 1881 48.2
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1305.8 2617 40.8
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1298.9 2509 41.9
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1282.7 2539 40.6
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1217.6 2542 40.3
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1195.3 2501 40.8
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1174.8 2603 39.7
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1172.9 2505 41.3
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1139.0 2507 39.5
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1127.9 2454 40.1
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1109.0 2440 40.4
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 3.4e-311 1073.2 1290 53.5
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 5.9e-291 1005.7 2346 37.9
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 8.6e-290 1001.9 2344 38.9
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.2e-270 938.3 1718 44.5
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 4.1e-260 903.3 958 55.9
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 8.9e-255 885.6 2546 35.6
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 8.1e-240 835.9 2755 34.8
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 8.1e-232 809.3 712 64.5
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 2.5e-225 787.7 2429 35.0
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 9.6e-225 785.8 1071 51.2
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 2.0e-222 778.1 448 88.8
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 2.0e-209 734.9 2425 35.0
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 2.0e-209 734.9 2425 35.0
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 2.6e-209 734.6 2439 34.6
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 9.7e-209 732.6 1033 51.0
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 3.7e-208 730.7 2440 34.4
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 5.0e-205 720.3 2470 34.7
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.9e-204 718.4 951 54.3
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.7e-187 661.4 1920 36.8
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.1e-180 639.4 1800 34.3
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 1.8e-170 605.5 564 62.2
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.7e-168 599.0 2574 30.5
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 4.6e-166 590.9 979 45.1
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 4.9e-152 544.3 930 42.2
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 1.5e-140 506.1 1384 37.5
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 4.0e-138 498.0 513 54.8
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 1.1e-124 453.4 778 42.4
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.8e-123 448.7 679 47.0
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 1.6e-107 396.4 2888 28.4
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.6e-102 379.8 969 35.5
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.1e-100 373.6 1835 30.1
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 5.9e-97 361.3 1224 31.3
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 7.4e-84 317.8 2799 28.3
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 2.5e-79 302.8 275 56.0
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 6.8e-61 241.5 2747 27.3
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 1.2e-57 230.7 376 39.9
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 7.8e-57 228.0 568 35.2
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.3e-56 226.5 2813 26.9
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 5.0e-56 225.3 1055 31.3
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 1.1e-47 197.6 314 41.1
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 1.8e-45 190.3 1096 27.8
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 4.0e-45 189.1 223 50.2
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 6.8e-45 188.3 257 51.8
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 2.6e-44 186.4 251 51.4
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 1.3e-40 174.1 588 31.1
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 2.5e-39 169.9 514 35.4
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 9.2e-34 151.4 337 36.8
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 3.6e-30 139.4 1253 26.3
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.7e-27 130.6 162 51.2
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 3.2e-26 126.3 162 50.6
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 4.6e-25 122.5 124 54.8
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 3.9e-24 119.4 316 35.8
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.6e-17 97.4 260 37.3
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 5.1e-16 92.4 214 34.1
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.3e-14 87.8 148 43.9
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 1.6e-14 87.4 63 65.1
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 2.1e-14 87.0 61 67.2
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 2.6e-12 80.1 105 44.8
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 4.5e-12 79.3 76 65.8
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 5.1e-08 65.9 81 51.9
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 3.3e-07 63.2 124 38.7
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 3.7e-06 59.7 96 39.6


User provided reference genes

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