Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 6.4e-75 283.9 133 100.0
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 3.5e-65 251.5 129 89.1
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 6.0e-65 250.8 133 85.7
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 1.0e-64 250.0 133 85.7
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 3.9e-64 248.1 129 88.4
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 4.3e-63 244.6 129 87.6
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 7.7e-60 233.8 133 82.7
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 1.0e-59 233.4 133 78.9
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.0e-59 233.4 133 78.9
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.0e-59 233.4 133 78.9
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 1.3e-59 233.0 133 78.2
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 2.2e-59 232.3 133 78.2
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 2.9e-59 231.9 133 78.9
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 2.9e-59 231.9 133 76.7
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 1.1e-58 229.9 133 75.2
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 4.2e-58 228.0 133 74.4
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 4.2e-58 228.0 133 76.7
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 7.2e-58 227.3 133 76.7
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 9.4e-58 226.9 129 78.3
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 9.4e-58 226.9 133 76.7
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 1.2e-57 226.5 133 75.2
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 1.2e-57 226.5 129 77.5
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 1.6e-57 226.1 129 76.7
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 1.6e-57 226.1 129 78.3
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 2.7e-57 225.3 129 76.7
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 3.6e-57 224.9 133 75.9
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 3.6e-57 224.9 133 73.7
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 4.6e-57 224.6 129 76.7
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 6.1e-57 224.2 129 76.0
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 6.1e-57 224.2 133 75.9
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 1.4e-56 223.0 129 75.2
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 1.4e-56 223.0 129 76.0
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 1.4e-56 223.0 129 77.5
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 1.8e-56 222.6 129 74.4
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 2.3e-56 222.2 129 76.7
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 3.0e-56 221.9 133 72.2
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 3.9e-56 221.5 130 75.4
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 6.7e-56 220.7 133 74.4
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 2.0e-55 219.2 129 74.4
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 2.0e-55 219.2 129 74.4
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 2.0e-55 219.2 132 72.0
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 2.0e-55 219.2 133 71.4
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 2.5e-55 218.8 129 74.4
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 3.3e-55 218.4 129 74.4
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 4.3e-55 218.0 129 74.4
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 5.7e-55 217.6 133 71.4
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 5.7e-55 217.6 129 75.2
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 7.4e-55 217.2 129 76.0
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 7.4e-55 217.2 129 73.6
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 7.4e-55 217.2 129 73.6
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 7.4e-55 217.2 129 76.0
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 1.7e-54 216.1 133 72.2
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 1.7e-54 216.1 129 72.1
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 2.8e-54 215.3 131 73.3
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 2.8e-54 215.3 131 73.3
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 2.8e-54 215.3 133 73.7
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 3.7e-54 214.9 129 73.6
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 3.7e-54 214.9 129 73.6
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 6.3e-54 214.2 133 74.4
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 6.3e-54 214.2 133 70.7
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 8.2e-54 213.8 129 73.6
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 1.1e-53 213.4 129 73.6
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.8e-53 212.6 131 71.8
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 1.8e-53 212.6 133 70.7
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 3.1e-53 211.8 129 72.9
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 5.3e-53 211.1 131 70.2
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 5.3e-53 211.1 133 70.7
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 6.9e-53 210.7 133 71.4
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 1.2e-52 209.9 129 72.1
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 1.5e-52 209.5 133 70.7
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.5e-52 209.5 129 70.5
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 1.7e-51 206.1 129 72.1
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 1.7e-51 206.1 130 70.8
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 3.8e-51 204.9 129 69.8
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 6.5e-51 204.1 129 69.8
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 8.5e-51 203.8 129 69.8
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 1.4e-50 203.0 174 56.9
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 2.1e-49 199.1 129 68.2
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 2.7e-49 198.7 131 70.2
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 3.6e-49 198.4 129 68.2
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 7.9e-49 197.2 129 64.3
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 1.8e-48 196.1 133 67.7
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 1.7e-46 189.5 127 64.6
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 4.1e-45 184.9 129 63.6
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 2.0e-44 182.6 130 63.1
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 3.5e-44 181.8 111 74.8
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 4.5e-44 181.4 223 43.9
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 7.7e-44 180.6 130 62.3
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 1.0e-43 180.3 130 61.5
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 1.0e-43 180.3 130 61.5
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 1.0e-43 180.3 130 61.5
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 1.3e-43 179.9 130 60.8
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 1.3e-43 179.9 130 60.8
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 8.5e-43 177.2 130 61.5
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 1.4e-42 176.4 130 60.8
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 1.4e-42 176.4 130 60.8
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 9.4e-42 173.7 130 59.2
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 9.4e-42 173.7 130 60.0
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 3.6e-41 171.8 129 58.1
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.8e-40 169.5 83 94.0
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 3.0e-40 168.7 156 53.2
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 6.7e-40 167.5 129 59.7
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 5.7e-39 164.5 131 58.0
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 2.2e-38 162.5 130 60.0
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 2.8e-38 162.2 102 69.6
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 8.2e-38 160.6 135 54.8
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 3.1e-37 158.7 129 52.7
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 9.1e-37 157.1 133 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 2.5e-34 149.1 129 52.7
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 1.0e-32 143.7 81 75.3
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 1.4e-32 143.3 129 51.2
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 4.0e-32 141.7 129 51.9
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 5.2e-32 141.4 85 74.1
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 2.6e-31 139.0 129 50.4
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 2.0e-23 112.8 76 67.1
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 9.8e-23 110.5 119 49.6
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 2.2e-22 109.4 67 71.6
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 1.6e-20 103.2 72 68.1
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 2.3e-19 99.4 54 77.8
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 2.8e-17 92.4 124 39.5
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 2.8e-14 82.4 48 72.9
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 3.7e-14 82.0 48 72.9
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.3e-11 73.6 53 62.3
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 1.5e-10 70.1 47 66.0
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 1.5e-10 70.1 43 72.1
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 1.6e-09 66.6 115 33.0


User provided reference genes

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