Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.4e-72 275.4 138 100.0
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.4e-53 210.3 111 93.7
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.0e-52 207.2 111 92.8
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-51 206.1 112 92.0
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-51 206.1 111 92.8
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.6e-50 202.2 111 91.9
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.1e-48 196.8 111 87.4
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 1.7e-46 189.5 111 84.7
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 1.7e-46 189.5 111 82.9
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 2.9e-46 188.7 137 71.5
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 1.9e-45 186.0 111 82.9
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 3.2e-45 185.3 110 82.7
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 5.5e-45 184.5 111 81.1
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 2.7e-44 182.2 111 84.7
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 2.7e-44 182.2 125 75.2
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-43 179.9 99 90.9
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 1.5e-42 176.4 111 77.5
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 2.8e-41 172.2 111 75.7
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 7.2e-37 157.5 111 69.4
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 4.0e-35 151.8 111 68.5
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 2.6e-34 149.1 111 67.6
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 7.5e-34 147.5 112 68.8
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 7.5e-34 147.5 111 64.0
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 3.7e-33 145.2 111 64.0
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 6.3e-33 144.4 115 66.1
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 8.3e-33 144.1 111 63.1
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 1.1e-32 143.7 111 63.1
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.4e-32 143.3 115 66.1
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.1e-32 142.1 111 62.2
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 4.1e-32 141.7 115 65.2
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 5.4e-32 141.4 112 66.1
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 7.0e-32 141.0 110 64.5
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 7.0e-32 141.0 97 72.2
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 9.1e-32 140.6 115 61.7
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.6e-31 139.8 115 60.9
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.6e-31 139.8 115 60.9
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 2.7e-31 139.0 115 65.2
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 3.5e-31 138.7 115 60.9
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 4.5e-31 138.3 114 62.3
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 5.9e-31 137.9 111 65.8
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 7.7e-31 137.5 115 65.2
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.0e-30 137.1 112 64.3
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 1.0e-30 137.1 112 64.3
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 1.7e-30 136.3 111 63.1
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 2.3e-30 136.0 112 64.3
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.3e-30 136.0 112 64.3
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 2.3e-30 136.0 112 64.3
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.3e-30 136.0 112 64.3
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.3e-30 136.0 112 63.4
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 2.9e-30 135.6 115 62.6
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 2.9e-30 135.6 112 60.7
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 8.6e-30 134.0 112 63.4
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 8.6e-30 134.0 112 60.7
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 1.1e-29 133.7 115 62.6
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.9e-29 132.9 112 58.0
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 3.3e-29 132.1 112 62.5
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 3.3e-29 132.1 112 62.5
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 4.2e-29 131.7 112 61.6
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 4.2e-29 131.7 112 62.5
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 4.2e-29 131.7 111 58.6
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 1.2e-28 130.2 112 62.5
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 1.6e-28 129.8 112 58.0
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 2.8e-28 129.0 113 57.5
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 2.8e-28 129.0 111 58.6
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 6.1e-28 127.9 112 56.2
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 1.4e-27 126.7 117 57.3
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.4e-27 126.7 117 57.3
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.3e-27 125.9 112 58.9
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 2.3e-27 125.9 112 57.1
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 2.3e-27 125.9 116 56.0
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 2.3e-27 125.9 113 61.9
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 3.0e-27 125.6 113 60.2
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 4.0e-27 125.2 111 60.4
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 5.2e-27 124.8 112 59.8
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 8.9e-27 124.0 112 58.0
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.0e-26 122.9 112 58.0
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 4.4e-26 121.7 112 58.0
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 5.7e-26 121.3 112 58.0
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 9.8e-26 120.6 112 52.7
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 2.2e-25 119.4 112 57.1
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 2.2e-25 119.4 112 56.2
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 3.7e-25 118.6 112 51.8
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 3.7e-25 118.6 112 57.1
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 6.3e-25 117.9 113 58.4
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 6.3e-25 117.9 112 55.4
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 1.4e-24 116.7 112 52.7
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 1.8e-24 116.3 112 53.6
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 2.4e-24 115.9 109 56.0
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 3.2e-24 115.5 112 52.7
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 3.2e-24 115.5 109 54.1
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 2.0e-23 112.8 109 52.3
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.7e-23 112.5 63 88.9
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 5.9e-23 111.3 112 50.9
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 7.8e-23 110.9 112 50.0
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 3.9e-22 108.6 112 46.4
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 1.1e-21 107.1 112 51.8
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 5.6e-21 104.8 113 54.0
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 7.3e-21 104.4 114 50.9
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 7.3e-21 104.4 115 52.2
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 1.6e-20 103.2 114 49.1
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 2.1e-20 102.8 113 52.2
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 2.8e-20 102.4 92 53.3
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.4e-19 100.1 113 48.7
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 1.8e-19 99.8 115 50.4
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 2.3e-19 99.4 114 48.2
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 3.1e-19 99.0 112 50.9
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 3.1e-19 99.0 112 50.9
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 4.0e-19 98.6 114 48.2
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 6.8e-19 97.8 114 48.2
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 8.9e-19 97.4 114 47.4
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 2.0e-18 96.3 112 50.0
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 2.6e-18 95.9 112 49.1
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 2.6e-18 95.9 86 61.6
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 3.4e-18 95.5 112 49.1
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 5.8e-18 94.7 85 54.1
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 9.8e-18 94.0 112 48.2
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 9.8e-18 94.0 112 48.2
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 1.9e-16 89.7 119 42.0
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 3.5e-15 85.5 91 50.5
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 2.3e-14 82.8 66 62.1
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 4.3e-13 78.6 75 56.0
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 1.5e-10 70.1 115 39.1
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 1.2e-07 60.5 100 43.0
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 4.6e-07 58.5 78 43.6
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 4.6e-07 58.5 66 48.5
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 6.0e-07 58.2 113 34.5


User provided reference genes

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