Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.6e-62 242.7 128 100.0
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 5.1e-45 184.5 129 79.8
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.8e-43 177.9 160 65.6
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 5.3e-42 174.5 129 78.3
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 1.2e-41 173.3 129 80.6
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 5.1e-37 157.9 110 80.0
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.0e-32 141.4 166 54.8
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 1.1e-28 130.2 103 72.8
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 6.3e-27 124.4 98 68.4
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 4.7e-14 81.6 97 50.5
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 4.7e-14 81.6 126 44.4
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 1.0e-13 80.5 130 45.4
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-13 80.5 146 41.8
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.8e-13 79.7 135 45.2
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.3e-13 79.3 74 59.5
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 2.3e-13 79.3 144 40.3
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 5.2e-13 78.2 93 50.5
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 5.2e-13 78.2 93 50.5
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 5.2e-13 78.2 74 58.1
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.8e-13 77.8 146 43.2
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.8e-13 77.8 147 42.9
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 8.8e-13 77.4 146 43.2
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 1.2e-12 77.0 145 42.8
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 1.2e-12 77.0 144 40.3
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.5e-12 76.6 104 46.2
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.0e-12 76.3 146 42.5
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.0e-12 76.3 93 55.9
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 2.6e-12 75.9 126 42.9
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 3.4e-12 75.5 145 42.8
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 4.4e-12 75.1 126 39.7
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 7.5e-12 74.3 146 41.1
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 7.5e-12 74.3 127 41.7
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 7.5e-12 74.3 71 60.6
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 9.8e-12 73.9 148 41.2
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 9.8e-12 73.9 51 70.6
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 9.8e-12 73.9 93 55.9
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 9.8e-12 73.9 98 46.9
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 9.8e-12 73.9 69 58.0
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 1.3e-11 73.6 92 47.8
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.3e-11 73.6 114 39.5
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 1.7e-11 73.2 145 39.3
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.7e-11 73.2 127 41.7
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 2.2e-11 72.8 142 42.3
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 2.8e-11 72.4 143 38.5
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 2.8e-11 72.4 143 39.9
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.8e-11 72.4 118 40.7
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 3.7e-11 72.0 145 37.9
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 3.7e-11 72.0 139 41.7
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.8e-11 71.6 70 60.0
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 4.8e-11 71.6 75 50.7
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.8e-11 71.6 81 46.9
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.8e-11 71.6 60 63.3
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 6.3e-11 71.2 74 58.1
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.3e-11 71.2 61 62.3
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 6.3e-11 71.2 60 63.3
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 6.3e-11 71.2 131 39.7
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 6.3e-11 71.2 135 40.7
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 6.3e-11 71.2 122 38.5
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.1e-10 70.5 69 56.5
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.1e-10 70.5 73 56.2
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.1e-10 70.5 61 62.3
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 1.1e-10 70.5 141 37.6
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 1.1e-10 70.5 120 40.8
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.1e-10 70.5 149 40.3
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.4e-10 70.1 144 41.0
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.8e-10 69.7 93 52.7
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.8e-10 69.7 92 48.9
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 2.4e-10 69.3 148 40.5
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.4e-10 69.3 114 40.4
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 3.1e-10 68.9 134 41.0
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 3.1e-10 68.9 139 41.0
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 3.1e-10 68.9 148 37.8
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 4.1e-10 68.6 138 34.1
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 4.1e-10 68.6 143 35.0
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 4.1e-10 68.6 126 38.1
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 4.1e-10 68.6 143 37.1
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 4.1e-10 68.6 146 39.0
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 5.4e-10 68.2 73 56.2
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 5.4e-10 68.2 60 61.7
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 7.0e-10 67.8 145 39.3
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 9.1e-10 67.4 97 45.4
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 9.1e-10 67.4 77 55.8
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.2e-09 67.0 166 33.7
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 1.2e-09 67.0 129 38.8
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 1.6e-09 66.6 142 35.9
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 1.6e-09 66.6 128 37.5
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 1.6e-09 66.6 108 40.7
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.0e-09 66.2 60 61.7
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 2.7e-09 65.9 69 50.7
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.7e-09 65.9 114 39.5
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 2.7e-09 65.9 70 55.7
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 3.5e-09 65.5 144 36.8
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 4.5e-09 65.1 136 39.0
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 4.5e-09 65.1 145 33.1
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 4.5e-09 65.1 143 37.1
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 4.5e-09 65.1 93 47.3
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 4.5e-09 65.1 95 42.1
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 5.9e-09 64.7 145 33.1
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 5.9e-09 64.7 144 37.5
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 7.7e-09 64.3 134 38.8
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 7.7e-09 64.3 130 39.2
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 1.0e-08 63.9 113 38.1
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 1.0e-08 63.9 138 39.1
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.0e-08 63.9 69 50.7
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 1.0e-08 63.9 131 35.9
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.0e-08 63.9 70 55.7
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.3e-08 63.5 142 31.7
Ca_25471_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.3e-08 63.5 62 54.8
Ca_29690_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.3e-08 63.5 62 54.8
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.3e-08 63.5 153 39.9
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.7e-08 63.2 166 34.3
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 1.7e-08 63.2 60 58.3
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 1.7e-08 63.2 146 34.2
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 2.2e-08 62.8 141 39.7
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 2.2e-08 62.8 136 39.0
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.2e-08 62.8 140 37.9
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 2.2e-08 62.8 94 45.7
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 2.9e-08 62.4 137 37.2
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 2.9e-08 62.4 138 38.4
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 2.9e-08 62.4 140 37.9
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 2.9e-08 62.4 70 54.3
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 3.8e-08 62.0 145 34.5
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 3.8e-08 62.0 57 61.4
Hma1.2p1_1283F.1_g272860 Hydrangea macrophylla HOM05D003094 ORTHO05D003482 5.0e-08 61.6 95 45.3
CARHR093590 Cardamine hirsuta HOM05D003094 ORTHO05D003482 6.5e-08 61.2 155 32.3
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 6.5e-08 61.2 110 41.8
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 6.5e-08 61.2 109 39.4
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 8.5e-08 60.8 63 50.8
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 8.5e-08 60.8 120 41.7
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 8.5e-08 60.8 140 37.9
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.1e-07 60.5 146 32.2
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 1.1e-07 60.5 145 31.0
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 1.1e-07 60.5 141 39.0
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.1e-07 60.5 68 51.5
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 1.1e-07 60.5 68 51.5
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.5e-07 60.1 137 40.1
HanXRQChr06g0180771 Helianthus annuus HOM05D003094 ORTHO05D003482 1.5e-07 60.1 65 53.8
Medtr6g082590 Medicago truncatula HOM05D003094 ORTHO05D003482 1.5e-07 60.1 128 30.5
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 1.5e-07 60.1 83 42.2
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 1.5e-07 60.1 127 37.0
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.9e-07 59.7 138 38.4
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 1.9e-07 59.7 141 36.9
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.9e-07 59.7 141 38.3
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 2.5e-07 59.3 149 34.9
HPP92_008848 Vanilla planifolia HOM05D003094 ORTHO05D003482 2.5e-07 59.3 98 41.8
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 3.2e-07 58.9 66 47.0
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 3.2e-07 58.9 149 33.6
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 3.2e-07 58.9 148 35.8
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 4.2e-07 58.5 102 36.3
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 5.5e-07 58.2 155 34.8
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 5.5e-07 58.2 147 34.7
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 5.5e-07 58.2 155 37.4
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 5.5e-07 58.2 68 51.5
PGR083G0382 Punica granatum HOM05D003094 ORTHO05D003482 5.5e-07 58.2 137 35.0
Sabra12G0032200 Salix brachista HOM05D003094 ORTHO05D003482 5.5e-07 58.2 138 30.4
HPP92_008864 Vanilla planifolia HOM05D003094 ORTHO05D003482 5.5e-07 58.2 136 36.8
AUR62029914 Chenopodium quinoa HOM05D003094 ORTHO05D003482 7.2e-07 57.8 60 48.3
TPR.G25985 Trifolium pratense HOM05D003094 ORTHO05D003482 7.2e-07 57.8 93 37.6
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 9.4e-07 57.4 121 38.8
MSTRG.4516 Avicennia marina HOM05D003094 ORTHO05D003482 1.2e-06 57.0 145 33.1
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 1.2e-06 57.0 149 33.6
Oeu052057.1 Olea europaea HOM05D003094 ORTHO05D003482 1.2e-06 57.0 143 33.6
Potri.012G046000 Populus trichocarpa HOM05D003094 ORTHO05D003482 1.2e-06 57.0 138 31.2
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 1.2e-06 57.0 68 42.6
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 1.6e-06 56.6 132 33.3
Psat1g035120 Pisum sativum HOM05D003094 ORTHO05D003482 1.6e-06 56.6 79 40.5
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 2.1e-06 56.2 71 43.7
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 2.1e-06 56.2 48 58.3
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 2.7e-06 55.8 71 45.1
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 2.7e-06 55.8 158 31.6
Glyma.07G097400 Glycine max HOM05D003094 ORTHO05D003482 3.6e-06 55.5 84 41.7
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 3.6e-06 55.5 102 40.2
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 4.7e-06 55.1 59 47.5
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 4.7e-06 55.1 59 47.5
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 4.7e-06 55.1 108 38.9
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 6.1e-06 54.7 143 33.6
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 8.0e-06 54.3 81 43.2


User provided reference genes

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