Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001966g0060 Nicotiana tabacum HOM05D001326 ORTHO05D004163 1.1e-50 203.0 100 100.0
Nitab4.5_0000569g0170 Nicotiana tabacum HOM05D001326 ORTHO05D004163 4.6e-25 117.9 129 56.6
Nitab4.5_0004888g0020 Nicotiana tabacum HOM05D001326 ORTHO05D004163 1.1e-23 113.2 129 54.3
Actinidia38087 Actinidia chinensis HOM05D001326 ORTHO05D004163 6.0e-17 90.9 125 45.6
CAN.G1621.9 Capsicum annuum HOM05D001326 ORTHO05D004163 1.8e-16 89.4 119 47.1
Solyc04g078380.3 Solanum lycopersicum HOM05D001326 ORTHO05D004163 2.3e-16 89.0 127 44.1
Sopen04g031970 Solanum pennellii HOM05D001326 ORTHO05D004163 2.3e-16 89.0 127 44.1
CAN.G107.48 Capsicum annuum HOM05D001326 ORTHO05D004163 3.0e-16 88.6 114 49.1
PGSC0003DMG400003309 Solanum tuberosum HOM05D001326 ORTHO05D004163 5.1e-16 87.8 102 50.0
Dinv35915 Davidia involucrata HOM05D000232 ORTHO05D004163 1.1e-15 86.7 103 47.6
Actinidia08267 Actinidia chinensis HOM05D001326 ORTHO05D004163 5.6e-15 84.3 121 46.3
Peaxi162Scf00219g00123 Petunia axillaris HOM05D001326 ORTHO05D004163 5.6e-15 84.3 119 45.4
Nitab4.5_0003035g0010 Nicotiana tabacum HOM05D001326 ORTHO05D004163 7.4e-15 84.0 116 45.7
Nitab4.5_0011741g0010 Nicotiana tabacum HOM05D001326 ORTHO05D004163 9.6e-15 83.6 105 49.5
Glyma.14G086900 Glycine max HOM05D001326 ORTHO05D004163 2.8e-14 82.0 107 46.7
Hma1.2p1_0634F.1_g192950 Hydrangea macrophylla HOM05D001326 ORTHO05D004163 4.8e-14 81.3 116 47.4
CANSAT25G2642 Cannabis sativa HOM05D001326 ORTHO05D004163 1.1e-13 80.1 103 45.6
Dinv39258 Davidia involucrata HOM05D001326 ORTHO05D004163 1.1e-13 80.1 101 45.5
Glyma.06G043700 Glycine max HOM05D001326 ORTHO05D004163 1.1e-13 80.1 100 46.0
Lalb_Chr23g0267351 Lupinus albus HOM05D001326 ORTHO05D004163 1.1e-13 80.1 97 45.4
ClCG05G020300 Citrullus lanatus HOM05D001326 ORTHO05D004163 1.8e-13 79.3 100 43.0
Sc15g0005510 Simmondsia chinensis HOM05D001326 ORTHO05D004163 1.8e-13 79.3 103 47.6
MELO3C016792.2 Cucumis melo HOM05D001326 ORTHO05D004163 4.0e-13 78.2 100 43.0
CsaV3_4G034780 Cucumis sativus L. HOM05D001326 ORTHO05D004163 5.3e-13 77.8 100 42.0
Migut.O00599 Erythranthe guttata HOM05D001326 ORTHO05D004163 5.3e-13 77.8 117 44.4
Glyma.04G043200 Glycine max HOM05D001326 ORTHO05D004163 5.3e-13 77.8 100 45.0
vmacro23170 Vaccinium macrocarpon HOM05D001326 ORTHO05D004163 5.3e-13 77.8 132 43.2
Gohir.D05G210000 Gossypium hirsutum HOM05D001326 ORTHO05D004163 6.9e-13 77.4 111 45.0
Gorai.009G216400 Gossypium raimondii HOM05D001326 ORTHO05D004163 6.9e-13 77.4 111 45.0
Sc15g0005810 Simmondsia chinensis HOM05D001326 ORTHO05D004163 6.9e-13 77.4 103 46.6
Aa31LG5G18920 Aethionema arabicum HOM05D001326 ORTHO05D004163 1.2e-12 76.6 97 45.4
Lj1g0010090 Lotus japonicus HOM05D001326 ORTHO05D004163 1.2e-12 76.6 97 45.4
Prupe.1G429000 Prunus persica HOM05D001326 ORTHO05D004163 1.2e-12 76.6 102 45.1
Rhsim06G0057100 Rhododendron simsii HOM05D001326 ORTHO05D004163 1.2e-12 76.6 112 46.4
Ca_13253_v3 Cicer arietinum L. HOM05D001326 ORTHO05D004163 1.5e-12 76.3 101 45.5
Gohir.A05G206500 Gossypium hirsutum HOM05D001326 ORTHO05D004163 1.5e-12 76.3 111 44.1
MSTRG.25063 Avicennia marina HOM05D001326 ORTHO05D004163 2.0e-12 75.9 116 42.2
Cc10_g05200 Coffea canephora HOM05D001326 ORTHO05D004163 2.0e-12 75.9 98 44.9
Glyma.17G237500 Glycine max HOM05D001326 ORTHO05D004163 2.0e-12 75.9 89 49.4
MD15G1075600 Malus domestica HOM05D001326 ORTHO05D004163 2.0e-12 75.9 102 44.1
TAR625G0613 Trochodendron aralioides HOM05D001326 ORTHO05D004163 2.0e-12 75.9 112 40.2
Migut.N02754 Erythranthe guttata HOM05D001326 ORTHO05D004163 2.6e-12 75.5 93 46.2
Thhalv10011812m.g Eutrema salsugineum HOM05D001326 ORTHO05D004163 2.6e-12 75.5 100 48.0
Lalb_Chr22g0354841 Lupinus albus HOM05D001326 ORTHO05D004163 2.6e-12 75.5 94 44.7
MD08G1091600 Malus domestica HOM05D001326 ORTHO05D004163 2.6e-12 75.5 90 51.1
Oeu016580.1 Olea europaea HOM05D001326 ORTHO05D004163 2.6e-12 75.5 88 50.0
BcaB04g17546 Brassica carinata HOM05D001326 ORTHO05D004163 3.4e-12 75.1 93 47.3
Psat0s3164g0120 Pisum sativum HOM05D001326 ORTHO05D004163 4.5e-12 74.7 119 38.7
Potri.002G122000 Populus trichocarpa HOM05D001326 ORTHO05D004163 4.5e-12 74.7 98 40.8
Sed0004426 Sechium edule HOM05D001326 ORTHO05D004163 5.8e-12 74.3 97 42.3
VMungo1309G2681 Vigna mungo HOM05D001326 ORTHO05D004163 5.8e-12 74.3 97 45.4
MSTRG.22238 Avicennia marina HOM05D001326 ORTHO05D004163 7.6e-12 73.9 100 43.0
CSS0008374 Camellia sinensis var. sinensis HOM05D001326 ORTHO05D004163 7.6e-12 73.9 90 46.7
Ca_15925_v3 Cicer arietinum L. HOM05D001326 ORTHO05D004163 7.6e-12 73.9 104 42.3
Lalb_Chr14g0368421 Lupinus albus HOM05D001326 ORTHO05D004163 7.6e-12 73.9 106 41.5
Potri.014G021900 Populus trichocarpa HOM05D001326 ORTHO05D004163 7.6e-12 73.9 108 41.7
PGR031G2476 Punica granatum HOM05D001326 ORTHO05D004163 7.6e-12 73.9 117 41.0
AUR62044632 Chenopodium quinoa HOM05D001326 ORTHO05D004163 1.0e-11 73.6 97 45.4
Actinidia22665 Actinidia chinensis HOM05D001326 ORTHO05D004163 1.3e-11 73.2 118 39.0
DCAR_008838 Daucus carota HOM05D001326 ORTHO05D004163 1.3e-11 73.2 100 44.0
ClCG08G016240 Citrullus lanatus HOM05D001326 ORTHO05D004163 1.7e-11 72.8 96 43.8
QL02p003371 Quercus lobata HOM05D001326 ORTHO05D004163 1.7e-11 72.8 106 42.5
SalBow6G1031 Salvia bowleyana HOM05D001326 ORTHO05D004163 1.7e-11 72.8 111 41.4
THA.LOC104820501 Tarenaya hassleriana HOM05D001326 ORTHO05D004163 1.7e-11 72.8 97 43.3
TPR.G25586 Trifolium pratense HOM05D001326 ORTHO05D004163 1.7e-11 72.8 98 43.9
CsaV3_2G026380 Cucumis sativus L. HOM05D001326 ORTHO05D004163 2.2e-11 72.4 96 42.7
Lsat_1_v5_gn_6_109441 Lactuca sativa HOM05D001326 ORTHO05D004163 2.2e-11 72.4 95 43.2
BcaC08g42930 Brassica carinata HOM05D001326 ORTHO05D004163 2.9e-11 72.0 107 43.0
C06p01670 Brassica napus HOM05D001326 ORTHO05D004163 2.9e-11 72.0 107 43.0
BolC6t35298H Brassica oleracea HOM05D001326 ORTHO05D004163 2.9e-11 72.0 107 43.0
Cfa018037 Carpinus fangiana HOM05D001326 ORTHO05D004163 2.9e-11 72.0 105 41.0
AUR62044370 Chenopodium quinoa HOM05D001326 ORTHO05D004163 2.9e-11 72.0 109 43.1
DCAR_012800 Daucus carota HOM05D001326 ORTHO05D004163 2.9e-11 72.0 91 46.2
Duzib041G0056 Durio zibethinus HOM05D001326 ORTHO05D004163 2.9e-11 72.0 114 42.1
Nn1g04667 Nelumbo nucifera HOM05D001326 ORTHO05D004163 2.9e-11 72.0 105 41.9
PSO541G2388 Papaver somniferum HOM05D001326 ORTHO05D004163 2.9e-11 72.0 115 40.0
Sabra02G0095900 Salix brachista HOM05D001326 ORTHO05D004163 2.9e-11 72.0 108 40.7
SGA_v2.0_scaffold28G11812 Striga asiatica HOM05D001326 ORTHO05D004163 2.9e-11 72.0 88 47.7
Thecc.08G095300 Theobroma cacao HOM05D001326 ORTHO05D004163 2.9e-11 72.0 98 43.9
unitig_26.g9808 Utricularia gibba HOM05D001326 ORTHO05D004163 2.9e-11 72.0 108 39.8
BcaC07g37236 Brassica carinata HOM05D001326 ORTHO05D004163 3.8e-11 71.6 109 42.2
C08p06600 Brassica napus HOM05D001326 ORTHO05D004163 3.8e-11 71.6 109 42.2
BolC8t47503H Brassica oleracea HOM05D001326 ORTHO05D004163 3.8e-11 71.6 109 42.2
MELO3C010830.2 Cucumis melo HOM05D001326 ORTHO05D004163 3.8e-11 71.6 96 42.7
Duzib093G0342 Durio zibethinus HOM05D001326 ORTHO05D004163 3.8e-11 71.6 98 42.9
Atru.chr13.770 Acer truncatum HOM05D001326 ORTHO05D004163 4.9e-11 71.2 100 43.0
A08p05940 Brassica napus HOM05D001326 ORTHO05D004163 4.9e-11 71.2 105 42.9
BraA08t32595Z Brassica rapa HOM05D001326 ORTHO05D004163 4.9e-11 71.2 105 42.9
Gorai.002G133200 Gossypium raimondii HOM05D001326 ORTHO05D004163 4.9e-11 71.2 96 41.7
BcaB07g33854 Brassica carinata HOM05D001326 ORTHO05D004163 6.5e-11 70.9 100 44.0
A10p06640 Brassica napus HOM05D001326 ORTHO05D004163 6.5e-11 70.9 89 47.2
BraA10t42922Z Brassica rapa HOM05D001326 ORTHO05D004163 6.5e-11 70.9 89 47.2
Ciclev10002480m.g Citrus clementina HOM05D001326 ORTHO05D004163 6.5e-11 70.9 108 39.8
HPP92_007849 Vanilla planifolia HOM05D001326 ORTHO05D004163 6.5e-11 70.9 105 39.0
Gohir.D01G109000 Gossypium hirsutum HOM05D001326 ORTHO05D004163 8.4e-11 70.5 96 41.7
Gorai.009G276700 Gossypium raimondii HOM05D001326 ORTHO05D004163 8.4e-11 70.5 94 46.8
Phvul.009G068700 Phaseolus vulgaris HOM05D001326 ORTHO05D004163 8.4e-11 70.5 97 43.3
SGA_v2.0_scaffold14G06954 Striga asiatica HOM05D001326 ORTHO05D004163 8.4e-11 70.5 88 46.6
Ah.05g167240 Amaranthus hybridus HOM05D001326 ORTHO05D004163 1.1e-10 70.1 105 41.9
Gohir.A01G121500 Gossypium hirsutum HOM05D001326 ORTHO05D004163 1.1e-10 70.1 96 40.6
Sed0026094 Sechium edule HOM05D001326 ORTHO05D004163 1.1e-10 70.1 96 40.6
TWI36G1533 Tripterygium wilfordii HOM05D001326 ORTHO05D004163 1.1e-10 70.1 91 42.9
Medtr3g102500 Medicago truncatula HOM05D001326 ORTHO05D004163 1.4e-10 69.7 97 41.2
EL10As7g23801 Beta vulgaris HOM05D001326 ORTHO05D004163 1.9e-10 69.3 97 42.3
CARHR180920 Cardamine hirsuta HOM05D001326 ORTHO05D004163 1.9e-10 69.3 98 44.9
Gohir.D05G264900 Gossypium hirsutum HOM05D001326 ORTHO05D004163 1.9e-10 69.3 94 46.8
Manes.18G042600 Manihot esculenta HOM05D001326 ORTHO05D004163 1.9e-10 69.3 96 41.7
Sed0018271 Sechium edule HOM05D001326 ORTHO05D004163 1.9e-10 69.3 100 41.0
THA.LOC104814178 Tarenaya hassleriana HOM05D001326 ORTHO05D004163 1.9e-10 69.3 88 44.3
Aqoxy5G01135 Aquilegia oxysepala HOM05D001326 ORTHO05D004163 2.5e-10 68.9 88 45.5
CARHR036740 Cardamine hirsuta HOM05D001326 ORTHO05D004163 2.5e-10 68.9 103 42.7
CDE07G0413 Ceratophyllum demersum HOM05D001326 ORTHO05D004163 2.5e-10 68.9 67 53.7
FAN20G2280 Fragaria x ananassa HOM05D001326 ORTHO05D004163 2.5e-10 68.9 93 40.9
PSO675G1014 Papaver somniferum HOM05D001326 ORTHO05D004163 2.5e-10 68.9 115 39.1
TAR381G1295 Trochodendron aralioides HOM05D001326 ORTHO05D004163 3.2e-10 68.6 100 39.0
CiPaw.16G035200 Carya illinoinensis HOM05D001326 ORTHO05D004163 4.2e-10 68.2 95 41.1
COL.COLO4_28576 Corchorus olitorius HOM05D001326 ORTHO05D004163 4.2e-10 68.2 113 37.2
ECA246G0756 Erigeron canadensis HOM05D001326 ORTHO05D004163 4.2e-10 68.2 115 38.3
Oeu036969.1 Olea europaea HOM05D001326 ORTHO05D004163 4.2e-10 68.2 103 40.8
unitig_8.g5036 Utricularia gibba HOM05D001326 ORTHO05D004163 4.2e-10 68.2 97 42.3
Cpa.g.sc21.138 Carica papaya HOM05D001326 ORTHO05D004163 9.3e-10 67.0 96 41.7
Psat6g014240 Pisum sativum HOM05D001326 ORTHO05D004163 9.3e-10 67.0 105 39.0
FvH4_2g33670 Fragaria vesca HOM05D001326 ORTHO05D004163 1.2e-09 66.6 99 38.4
FAN15G1104 Fragaria x ananassa HOM05D001326 ORTHO05D004163 1.2e-09 66.6 99 38.4
FAN24G1427 Fragaria x ananassa HOM05D001326 ORTHO05D004163 1.2e-09 66.6 99 38.4
TWI09G1274 Tripterygium wilfordii HOM05D001326 ORTHO05D004163 1.6e-09 66.2 101 39.6
AL1G53320 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 2.1e-09 65.9 86 44.2
FAN27G3472 Fragaria x ananassa HOM05D001326 ORTHO05D004163 2.1e-09 65.9 98 38.8
Sabra14G0014500 Salix brachista HOM05D001326 ORTHO05D004163 2.1e-09 65.9 108 38.0
Sp1g34320 Schrenkiella parvula HOM05D001326 ORTHO05D004163 2.1e-09 65.9 96 41.7
CiPaw.15G049900 Carya illinoinensis HOM05D001326 ORTHO05D004163 2.7e-09 65.5 95 40.0
Haze_18087 Corylus avellana HOM05D001326 ORTHO05D004163 2.7e-09 65.5 110 36.4
RcHm_v2.0_Chr6g0308881 Rosa chinensis HOM05D001326 ORTHO05D004163 2.7e-09 65.5 95 38.9
AT1G47200 Arabidopsis thaliana HOM05D001326 ORTHO05D004163 3.5e-09 65.1 112 36.6
CANSAT01G2404 Cannabis sativa HOM05D001326 ORTHO05D004163 3.5e-09 65.1 97 39.2
AL47U10010 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 4.6e-09 64.7 98 39.8
AL8G17650 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 4.6e-09 64.7 98 39.8
HanXRQChr05g0150481 Helianthus annuus HOM05D001326 ORTHO05D004163 4.6e-09 64.7 89 42.7
Nn5g30440 Nelumbo nucifera HOM05D001326 ORTHO05D004163 4.6e-09 64.7 101 38.6
AT5G43070 Arabidopsis thaliana HOM05D001326 ORTHO05D004163 6.0e-09 64.3 98 39.8
Carub.0008s0565 Capsella rubella HOM05D001326 ORTHO05D004163 6.0e-09 64.3 100 40.0
Carub.0001s3596 Capsella rubella HOM05D001326 ORTHO05D004163 7.9e-09 63.9 86 43.0
Phvul.001G025400 Phaseolus vulgaris HOM05D001326 ORTHO05D004163 1.0e-08 63.5 47 63.8
Actinidia33349 Actinidia chinensis HOM05D001326 ORTHO05D004163 1.3e-08 63.2 73 46.6
HPP92_023698 Vanilla planifolia HOM05D001326 ORTHO05D004163 1.3e-08 63.2 116 37.9
ATR0205G017 Amborella trichopoda HOM05D001326 ORTHO05D004163 2.3e-08 62.4 101 37.6
Medtr1g018710 Medicago truncatula HOM05D001326 ORTHO05D004163 2.3e-08 62.4 88 40.9
HPP92_004637 Vanilla planifolia HOM05D001326 ORTHO05D004163 2.3e-08 62.4 101 35.6
Aqoxy6G02840 Aquilegia oxysepala HOM05D001326 ORTHO05D004163 3.0e-08 62.0 108 37.0
MBI16_g04493_MAGBIO Magnolia biondii HOM05D001326 ORTHO05D004163 8.7e-08 60.5 98 37.8
vmacro23334 Vaccinium macrocarpon HOM05D001326 ORTHO05D004163 1.1e-07 60.1 48 58.3
Zm00001eb007170 Zea mays HOM05D001326 ORTHO05D004163 1.1e-07 60.1 111 35.1
Lj4P764T7 Lonicera japonica HOM05D001326 ORTHO05D004163 1.9e-07 59.3 73 41.1
Zm00001eb400520 Zea mays HOM05D001326 ORTHO05D004163 2.5e-07 58.9 92 38.0
Thhalv10003281m.g Eutrema salsugineum HOM05D001326 ORTHO05D004163 3.3e-07 58.5 89 39.3
Lsat_1_v5_gn_1_23021 Lactuca sativa HOM05D001326 ORTHO05D004163 4.3e-07 58.2 92 39.1
Zm00001eb326490 Zea mays HOM05D001326 ORTHO05D004163 4.3e-07 58.2 102 33.3
VMungo0647G1866 Vigna mungo HOM05D001326 ORTHO05D004163 9.6e-07 57.0 68 44.1
Os03g0209000 Oryza sativa ssp. japonica HOM05D001326 ORTHO05D004163 1.3e-06 56.6 94 36.2
Eucgr.F00159 Eucalyptus grandis HOM05D001326 ORTHO05D004163 2.1e-06 55.8 76 35.5
unitig_578.g16543 Utricularia gibba HOM05D001326 ORTHO05D004163 2.8e-06 55.5 101 37.6
Zm00001eb339210 Zea mays HOM05D001326 ORTHO05D004163 8.2e-06 53.9 92 35.9


User provided reference genes

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