Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.7e-94 347.4 188 100.0
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 3.5e-74 282.0 188 84.6
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 6.5e-73 277.7 188 83.0
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 5.5e-72 274.6 188 81.9
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 2.3e-70 269.2 188 81.4
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 2.0e-66 256.1 195 76.4
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 4.3e-48 195.3 190 64.2
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 3.6e-39 165.6 194 56.7
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.5e-37 160.2 99 86.9
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.5e-37 160.2 129 72.1
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.0e-37 159.8 183 56.3
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 3.4e-37 159.1 99 84.8
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 5.8e-37 158.3 198 52.0
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 7.5e-37 157.9 189 55.0
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 9.9e-37 157.5 203 53.2
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 1.3e-36 157.1 190 53.7
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 1.7e-36 156.8 189 55.6
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.9e-36 156.0 103 81.6
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 1.4e-35 153.7 186 53.2
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 3.2e-35 152.5 116 75.0
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 4.1e-35 152.1 191 53.9
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 5.4e-35 151.8 96 84.4
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 7.1e-35 151.4 92 87.0
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 9.2e-35 151.0 186 53.2
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 1.2e-34 150.6 144 62.5
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 2.1e-34 149.8 172 54.7
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 2.1e-34 149.8 187 54.0
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 2.1e-34 149.8 176 54.5
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 2.7e-34 149.4 122 70.5
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 2.7e-34 149.4 95 83.2
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 4.6e-34 148.7 186 52.7
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 4.6e-34 148.7 169 54.4
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 7.8e-34 147.9 154 57.1
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 1.0e-33 147.5 190 51.1
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 1.3e-33 147.1 121 66.9
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 3.0e-33 146.0 95 83.2
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 5.1e-33 145.2 92 84.8
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 6.6e-33 144.8 94 77.7
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 6.6e-33 144.8 94 78.7
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 8.6e-33 144.4 122 67.2
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 1.1e-32 144.1 157 55.4
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 1.1e-32 144.1 141 59.6
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.1e-32 144.1 190 50.0
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 1.1e-32 144.1 190 50.0
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.1e-32 144.1 221 48.4
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.5e-32 143.7 115 66.1
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.9e-32 143.3 181 53.6
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.9e-32 143.3 93 77.4
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.9e-32 143.3 127 67.7
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.9e-32 143.3 155 59.4
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 2.5e-32 142.9 114 67.5
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 2.5e-32 142.9 98 76.5
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.5e-32 142.9 128 65.6
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 3.3e-32 142.5 114 66.7
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 4.3e-32 142.1 106 69.8
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 4.3e-32 142.1 186 51.6
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 4.3e-32 142.1 139 59.7
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 4.3e-32 142.1 110 67.3
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 5.6e-32 141.7 188 50.0
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 7.3e-32 141.4 187 54.0
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 1.2e-31 140.6 107 67.3
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.2e-31 140.6 113 70.8
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 1.6e-31 140.2 188 49.5
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.6e-31 140.2 187 47.1
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.6e-31 140.2 187 47.1
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.6e-31 140.2 187 47.1
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.1e-31 139.8 134 60.4
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 2.1e-31 139.8 126 61.9
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 4.7e-31 138.7 136 61.0
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 4.7e-31 138.7 136 61.0
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 6.2e-31 138.3 180 50.6
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 6.2e-31 138.3 187 49.7
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 6.2e-31 138.3 88 76.1
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 6.2e-31 138.3 82 89.0
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 8.1e-31 137.9 104 70.2
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 8.1e-31 137.9 96 74.0
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 8.1e-31 137.9 145 58.6
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 8.1e-31 137.9 96 75.0
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 1.4e-30 137.1 97 74.2
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.8e-30 136.7 189 49.7
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 2.4e-30 136.3 96 75.0
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 3.1e-30 136.0 91 78.0
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 3.1e-30 136.0 91 78.0
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 3.1e-30 136.0 136 58.8
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 3.1e-30 136.0 189 49.7
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 4.0e-30 135.6 142 57.0
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 6.8e-30 134.8 123 64.2
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 6.8e-30 134.8 116 65.5
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 8.9e-30 134.4 148 55.4
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.5e-29 133.7 113 67.3
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.0e-29 133.3 183 53.6
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 2.0e-29 133.3 185 48.6
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 4.4e-29 132.1 116 62.1
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 7.6e-29 131.3 90 78.9
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 9.9e-29 131.0 136 60.3
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 9.9e-29 131.0 122 61.5
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 1.3e-28 130.6 92 76.1
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 2.2e-28 129.8 94 75.5
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 3.8e-28 129.0 167 47.9
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.8e-28 129.0 136 55.9
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 4.9e-28 128.6 95 72.6
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 8.4e-28 127.9 179 48.0
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 8.4e-28 127.9 127 62.2
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 1.9e-27 126.7 95 69.5
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.2e-26 124.0 186 48.4
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.2e-23 114.0 77 74.0
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 1.6e-23 113.6 72 81.9
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 2.1e-23 113.2 117 56.4
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 5.2e-22 108.6 73 75.3
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 1.5e-21 107.1 105 55.2
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 3.4e-21 105.9 86 61.6
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 7.6e-21 104.8 78 65.4
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 7.1e-19 98.2 111 51.4
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 7.1e-19 98.2 107 54.2
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 3.5e-18 95.9 102 52.9
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 1.9e-16 90.1 96 51.0
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.3e-16 89.4 57 80.7
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 1.2e-13 80.9 68 61.8
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 9.9e-13 77.8 150 39.3
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.7e-12 77.0 63 71.4
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 1.7e-12 77.0 98 51.0
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 1.4e-11 73.9 124 42.7
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 2.4e-11 73.2 58 70.7
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 5.4e-11 72.0 123 34.1
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 2.1e-10 70.1 122 41.8
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 1.0e-09 67.8 43 79.1
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.8e-09 67.0 96 45.8
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 2.1e-07 60.1 137 36.5
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 3.7e-07 59.3 39 76.9
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 6.2e-07 58.5 122 28.7


User provided reference genes

Program Settings