Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 6.1e-180 634.0 317 100.0
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.0e-171 606.7 317 95.3
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 6.7e-163 577.4 317 90.2
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 2.8e-161 572.0 317 89.6
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 2.8e-161 572.0 317 89.3
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 4.1e-160 568.2 317 89.6
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 4.5e-159 564.7 318 87.7
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 7.2e-157 557.4 317 86.4
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 8.8e-155 550.4 316 86.7
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.5e-154 549.7 315 85.4
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 1.6e-148 529.6 329 81.2
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 4.8e-145 518.1 319 79.9
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.1e-144 516.9 317 81.4
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.1e-144 516.9 317 81.4
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 5.4e-144 514.6 317 79.5
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.6e-143 513.1 317 79.8
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 7.7e-143 510.8 306 82.0
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 1.3e-142 510.0 318 79.2
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 1.7e-142 509.6 300 82.7
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.2e-142 509.2 317 79.8
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 8.5e-142 507.3 319 79.3
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 1.9e-141 506.1 319 79.0
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 4.2e-141 505.0 328 76.5
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 7.2e-141 504.2 300 82.3
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 7.2e-141 504.2 317 80.1
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 2.1e-140 502.7 317 78.5
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 3.6e-140 501.9 309 79.9
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 6.1e-140 501.1 279 89.6
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 6.1e-140 501.1 318 77.4
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 8.0e-140 500.7 317 78.5
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 1.8e-139 499.6 323 78.3
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 1.8e-139 499.6 319 77.1
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 3.0e-139 498.8 300 81.0
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 4.0e-139 498.4 354 71.8
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 1.5e-138 496.5 308 78.9
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 2.6e-138 495.7 317 77.3
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 3.4e-138 495.4 317 77.9
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 9.8e-138 493.8 318 77.4
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.7e-137 491.9 317 77.9
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 6.3e-137 491.1 318 75.5
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 8.3e-137 490.7 310 77.7
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.1e-136 490.3 317 77.9
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 1.1e-136 490.3 300 79.7
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.4e-136 490.0 351 71.8
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.8e-136 489.6 316 77.5
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 2.4e-136 489.2 317 78.5
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 9.2e-136 487.3 305 78.4
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 2.7e-135 485.7 317 76.0
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 3.5e-135 485.3 318 75.2
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 4.5e-135 485.0 317 75.4
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 5.9e-135 484.6 300 80.0
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 7.7e-135 484.2 316 75.3
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 7.7e-135 484.2 300 78.7
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 1.3e-134 483.4 302 78.5
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 1.7e-134 483.0 317 76.0
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 2.3e-134 482.6 305 76.4
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 2.9e-134 482.3 317 75.4
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 5.0e-134 481.5 300 77.7
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.5e-133 479.2 283 82.3
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 2.5e-133 479.2 317 73.8
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 2.5e-133 479.2 302 77.2
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 3.3e-133 478.8 301 77.4
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 7.3e-133 477.6 317 73.8
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 7.3e-133 477.6 369 68.3
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 9.5e-133 477.2 317 74.4
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 8.0e-132 474.2 337 71.8
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 8.0e-132 474.2 335 71.6
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 1.8e-131 473.0 283 81.3
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 3.0e-131 472.2 301 76.1
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 6.8e-131 471.1 308 74.7
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.5e-130 469.9 317 72.9
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.6e-130 469.2 317 72.9
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 7.5e-130 467.6 302 76.2
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 9.8e-130 467.2 317 74.1
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 1.3e-129 466.8 316 76.6
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 1.3e-129 466.8 283 80.6
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 4.9e-129 464.9 308 74.0
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 1.4e-128 463.4 300 76.0
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.7e-127 459.1 309 74.8
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 2.7e-127 459.1 305 75.7
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 4.6e-127 458.4 300 73.7
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 2.3e-126 456.1 286 80.1
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 3.0e-126 455.7 283 78.4
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 6.6e-126 454.5 311 76.2
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 3.3e-125 452.2 251 90.0
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 4.3e-125 451.8 300 72.0
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 5.6e-125 451.4 300 71.7
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.8e-123 446.4 281 76.5
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 8.9e-123 444.1 299 70.9
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 1.3e-121 440.3 250 87.2
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 2.2e-121 439.5 300 71.7
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 8.3e-121 437.6 300 71.3
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 9.2e-120 434.1 299 69.9
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 2.0e-119 433.0 300 70.0
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 2.0e-119 433.0 300 70.0
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 2.7e-119 432.6 250 84.0
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 2.7e-119 432.6 297 69.0
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 6.0e-119 431.4 345 66.1
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.3e-118 430.3 300 69.7
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 1.7e-118 429.9 300 69.0
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.7e-118 429.9 300 70.0
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 2.3e-118 429.5 299 69.6
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 3.0e-118 429.1 300 69.3
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 3.9e-118 428.7 312 67.3
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 5.0e-118 428.3 299 68.9
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 1.2e-116 423.7 299 68.2
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.2e-116 423.7 313 71.9
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 6.2e-116 421.4 345 65.2
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 4.0e-115 418.7 308 63.3
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 2.2e-113 412.9 300 67.7
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 8.6e-110 401.0 307 67.8
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 1.6e-108 396.7 250 76.8
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 3.4e-98 362.5 302 58.3
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 7.1e-96 354.8 226 81.9
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.2e-95 354.0 209 82.8
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 5.1e-94 348.6 223 79.8
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-89 333.2 191 86.9
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 8.4e-89 331.3 301 59.5
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 4.3e-77 292.4 317 52.7
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 5.8e-74 282.0 335 46.0
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 1.1e-72 277.7 208 67.3
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 9.6e-69 264.6 186 69.4
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.1e-61 241.1 306 45.8
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 1.5e-61 240.7 178 73.6
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 4.3e-61 239.2 167 74.3
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 6.3e-60 235.3 142 85.9
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 3.7e-52 209.5 318 39.3
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-44 184.5 170 55.9
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 9.1e-43 178.3 117 71.8
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 7.2e-40 168.7 112 75.9
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-39 167.9 100 82.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.8e-38 164.1 91 87.9
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 1.3e-33 147.9 79 88.6
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 1.0e-30 138.3 176 47.7
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 5.2e-22 109.4 67 79.1
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 8.3e-20 102.1 72 69.4
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 2.7e-18 97.1 85 58.8
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 4.7e-15 86.3 56 73.2
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 8.0e-15 85.5 53 79.2
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 9.8e-13 78.6 81 51.9
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 2.5e-08 63.9 40 67.5


User provided reference genes

Program Settings